PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc13b | dr11_v1_chr11_+_2156430_2156430 | 0.84 | 5.7e-06 | Click! |
hoxd13a | dr11_v1_chr9_-_1990323_1990323 | 0.83 | 1.4e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_20340543 Show fit | 6.73 |
ENSDART00000055623
|
hemoglobin beta embryonic-3 |
|
chr6_-_8360918 Show fit | 3.35 |
ENSDART00000004716
|
acid phosphatase 5a, tartrate resistant |
|
chr21_+_11503212 Show fit | 2.37 |
ENSDART00000146701
|
si:dkey-184p9.7 |
|
chr9_-_33063083 Show fit | 2.17 |
ENSDART00000048550
|
si:ch211-125e6.5 |
|
chr16_-_12060488 Show fit | 1.96 |
ENSDART00000188733
|
si:ch211-69g19.2 |
|
chr14_-_33978117 Show fit | 1.92 |
ENSDART00000128515
|
forkhead box A sequence |
|
chr3_+_31058464 Show fit | 1.91 |
ENSDART00000153381
|
si:dkey-66i24.7 |
|
chr9_-_33062891 Show fit | 1.91 |
ENSDART00000161182
|
si:ch211-125e6.5 |
|
chr9_-_33081978 Show fit | 1.90 |
ENSDART00000100918
|
zgc:172053 |
|
chr18_+_48428713 Show fit | 1.89 |
ENSDART00000076861
|
Fli-1 proto-oncogene, ETS transcription factor a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.7 | GO:0015671 | oxygen transport(GO:0015671) |
0.8 | 4.2 | GO:0097510 | base-excision repair, AP site formation via deaminated base removal(GO:0097510) |
0.0 | 2.3 | GO:0001570 | vasculogenesis(GO:0001570) |
0.0 | 2.3 | GO:0031101 | fin regeneration(GO:0031101) |
0.2 | 2.2 | GO:0030214 | hyaluronan catabolic process(GO:0030214) |
0.2 | 2.0 | GO:0045453 | bone resorption(GO:0045453) |
0.0 | 2.0 | GO:0007030 | Golgi organization(GO:0007030) |
0.0 | 2.0 | GO:0006352 | DNA-templated transcription, initiation(GO:0006352) |
0.0 | 2.0 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
0.3 | 1.9 | GO:0033687 | osteoblast proliferation(GO:0033687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.7 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.1 | 2.6 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.1 | 2.4 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.5 | 1.8 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.5 | 1.8 | GO:0033186 | CAF-1 complex(GO:0033186) |
0.4 | 1.8 | GO:0031510 | SUMO activating enzyme complex(GO:0031510) |
0.1 | 1.8 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.0 | 1.8 | GO:0005876 | spindle microtubule(GO:0005876) |
0.0 | 1.8 | GO:0005814 | centriole(GO:0005814) |
0.2 | 1.7 | GO:0044613 | nuclear pore central transport channel(GO:0044613) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.7 | GO:0031720 | haptoglobin binding(GO:0031720) |
1.4 | 4.2 | GO:0043739 | G/U mismatch-specific uracil-DNA glycosylase activity(GO:0043739) |
0.4 | 3.4 | GO:0003993 | acid phosphatase activity(GO:0003993) |
0.7 | 2.2 | GO:0046403 | polynucleotide 3'-phosphatase activity(GO:0046403) |
0.6 | 2.2 | GO:0033906 | hyaluronoglucuronidase activity(GO:0033906) |
0.1 | 1.9 | GO:0032041 | histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) |
0.6 | 1.8 | GO:0004555 | alpha,alpha-trehalase activity(GO:0004555) trehalase activity(GO:0015927) |
0.6 | 1.8 | GO:0008022 | protein C-terminus binding(GO:0008022) |
0.3 | 1.8 | GO:0061133 | endopeptidase activator activity(GO:0061133) |
0.0 | 1.8 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.1 | 2.3 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 2.1 | PID ATM PATHWAY | ATM pathway |
0.1 | 1.9 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.1 | 1.9 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 1.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 1.6 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 1.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.9 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
0.0 | 0.9 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 3.5 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.0 | 2.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.3 | 1.8 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.1 | 1.4 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.0 | 1.4 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 1.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.0 | 1.1 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.0 | 1.0 | REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 3 PROMOTER | Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter |
0.0 | 1.0 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |