PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc6b | dr11_v1_chr11_+_2198831_2198831 | 0.91 | 5.2e-08 | Click! |
hoxc6a | dr11_v1_chr23_+_36115541_36115541 | 0.06 | 8.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_16422654 Show fit | 4.31 |
ENSDART00000150149
|
tyrosyl-DNA phosphodiesterase 1 |
|
chr16_+_54209504 Show fit | 3.27 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr3_-_19368435 Show fit | 3.03 |
ENSDART00000132987
|
sphingosine-1-phosphate receptor 5a |
|
chr17_+_30369396 Show fit | 2.92 |
ENSDART00000076611
|
growth regulation by estrogen in breast cancer 1 |
|
chr16_+_29509133 Show fit | 2.66 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr25_-_21031007 Show fit | 2.56 |
ENSDART00000138985
|
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide a |
|
chr2_-_31833347 Show fit | 2.33 |
ENSDART00000109460
|
nucleolar protein 7 |
|
chr22_-_16154771 Show fit | 2.27 |
ENSDART00000009464
|
solute carrier family 30 (zinc transporter), member 7 |
|
chr2_+_15048410 Show fit | 2.20 |
ENSDART00000058484
|
calponin 3, acidic b |
|
chr21_-_26490186 Show fit | 2.12 |
ENSDART00000009889
|
zgc:110540 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 7.6 | GO:0000012 | single strand break repair(GO:0000012) |
0.0 | 4.0 | GO:0007188 | adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188) |
0.2 | 3.0 | GO:0000915 | assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) actomyosin contractile ring assembly(GO:0000915) actomyosin contractile ring organization(GO:0044837) |
0.1 | 2.9 | GO:0021983 | pituitary gland development(GO:0021983) |
0.1 | 2.6 | GO:0016925 | protein sumoylation(GO:0016925) |
0.4 | 2.0 | GO:0006700 | C21-steroid hormone biosynthetic process(GO:0006700) |
0.3 | 1.7 | GO:1900145 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
0.1 | 1.7 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.1 | 1.7 | GO:0006829 | zinc II ion transport(GO:0006829) |
0.0 | 1.7 | GO:0006367 | transcription initiation from RNA polymerase II promoter(GO:0006367) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.7 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.3 | 1.7 | GO:0005673 | transcription factor TFIIE complex(GO:0005673) |
0.0 | 1.7 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 1.7 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.0 | 1.7 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.1 | 1.6 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.1 | 1.5 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 1.4 | GO:0005682 | U5 snRNP(GO:0005682) |
0.1 | 1.2 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 1.2 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 4.3 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.0 | 3.9 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.1 | 3.3 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.4 | 3.0 | GO:0038036 | sphingosine-1-phosphate receptor activity(GO:0038036) |
0.0 | 2.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.2 | 2.6 | GO:0061665 | SUMO ligase activity(GO:0061665) |
0.2 | 2.6 | GO:0031821 | G-protein coupled serotonin receptor binding(GO:0031821) |
0.0 | 2.2 | GO:0005516 | calmodulin binding(GO:0005516) |
0.3 | 2.1 | GO:0019136 | deoxynucleoside kinase activity(GO:0019136) |
0.7 | 2.0 | GO:0016713 | cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 3.0 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.9 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.2 | 2.6 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 1.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 0.7 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.5 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 0.4 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 0.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.2 | 3.3 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 2.9 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 2.7 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.2 | 2.0 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.1 | 1.7 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 1.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 1.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.0 | 1.7 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.0 | 1.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |