PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc9a | dr11_v1_chr23_+_36095260_36095260 | -0.43 | 6.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 7.29 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr8_+_47633438 Show fit | 5.87 |
ENSDART00000139096
|
si:ch211-251b21.1 |
|
chr8_+_6954984 Show fit | 5.21 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr6_-_46875310 Show fit | 4.64 |
ENSDART00000154442
|
immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3 |
|
chr8_+_16004154 Show fit | 3.47 |
ENSDART00000134787
ENSDART00000172510 ENSDART00000141173 |
ELAV like neuron-specific RNA binding protein 4 |
|
chr8_+_22931427 Show fit | 3.38 |
ENSDART00000063096
|
synaptophysin a |
|
chr2_+_2223837 Show fit | 3.29 |
ENSDART00000101038
ENSDART00000129354 |
transmembrane inner ear |
|
chr12_+_16440708 Show fit | 3.25 |
ENSDART00000113810
|
ankyrin repeat domain 1b (cardiac muscle) |
|
chr15_-_14375452 Show fit | 3.02 |
ENSDART00000160675
ENSDART00000164028 ENSDART00000171642 |
D4, zinc and double PHD fingers family 1 |
|
chr5_+_36932718 Show fit | 2.96 |
ENSDART00000037879
|
cone-rod homeobox |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.9 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.0 | 6.6 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.7 | 4.1 | GO:0021767 | mammillary body development(GO:0021767) |
0.2 | 3.3 | GO:0060088 | auditory receptor cell stereocilium organization(GO:0060088) |
0.1 | 3.0 | GO:0042462 | eye photoreceptor cell development(GO:0042462) |
0.6 | 2.8 | GO:0003210 | cardiac atrium formation(GO:0003210) |
0.1 | 2.6 | GO:0030032 | lamellipodium assembly(GO:0030032) |
0.1 | 2.4 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.0 | 2.2 | GO:0021782 | glial cell development(GO:0021782) |
0.2 | 2.1 | GO:1990118 | sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 6.5 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
0.0 | 3.7 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.1 | 3.5 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 3.0 | GO:0071565 | nBAF complex(GO:0071565) |
0.0 | 2.4 | GO:0097517 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.4 | 2.1 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.0 | 2.1 | GO:0055037 | recycling endosome(GO:0055037) |
0.1 | 1.9 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.2 | 1.6 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.3 | 1.5 | GO:0031258 | lamellipodium membrane(GO:0031258) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 6.5 | GO:0015277 | kainate selective glutamate receptor activity(GO:0015277) |
0.1 | 3.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.8 | 3.3 | GO:0061629 | RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629) |
0.0 | 3.0 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.3 | 2.8 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.1 | 2.4 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
0.3 | 2.3 | GO:0015250 | water channel activity(GO:0015250) |
0.2 | 2.1 | GO:0005451 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.2 | 2.1 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
0.0 | 1.9 | GO:0043130 | ubiquitin binding(GO:0043130) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.1 | 1.1 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.1 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 0.6 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.5 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |
0.1 | 0.4 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |