PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxd10a | dr11_v1_chr9_-_1970071_1970071 | 0.56 | 1.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_23142946 Show fit | 1.28 |
ENSDART00000152933
|
si:ch211-196c10.13 |
|
chr6_+_13201358 Show fit | 1.17 |
ENSDART00000190290
|
|
|
chr7_+_22982201 Show fit | 1.00 |
ENSDART00000134116
|
cyclin B3 |
|
chr6_-_15757867 Show fit | 0.84 |
ENSDART00000063665
|
atypical chemokine receptor 3b |
|
chr7_+_22981909 Show fit | 0.72 |
ENSDART00000122449
|
cyclin B3 |
|
chr3_-_26184018 Show fit | 0.71 |
ENSDART00000191604
|
si:ch211-11k18.4 |
|
chr10_-_17484762 Show fit | 0.65 |
ENSDART00000137905
ENSDART00000007961 |
5'-nucleotidase, cytosolic II, like 1 |
|
chr6_+_29386728 Show fit | 0.63 |
ENSDART00000104303
|
actin-like 6A |
|
chr1_-_40911332 Show fit | 0.60 |
ENSDART00000027463
|
H6 family homeobox 4 |
|
chr19_-_25693728 Show fit | 0.56 |
ENSDART00000136187
|
biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0010389 | regulation of G2/M transition of mitotic cell cycle(GO:0010389) |
0.0 | 0.9 | GO:0015985 | energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986) |
0.2 | 0.8 | GO:0021730 | trigeminal sensory nucleus development(GO:0021730) |
0.1 | 0.6 | GO:0019747 | regulation of isoprenoid metabolic process(GO:0019747) regulation of vitamin metabolic process(GO:0030656) regulation of retinoic acid biosynthetic process(GO:1900052) |
0.0 | 0.6 | GO:0043967 | histone H4 acetylation(GO:0043967) |
0.2 | 0.5 | GO:0000212 | meiotic spindle organization(GO:0000212) |
0.2 | 0.5 | GO:0046048 | pyrimidine ribonucleoside diphosphate metabolic process(GO:0009193) UDP metabolic process(GO:0046048) |
0.1 | 0.5 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) |
0.0 | 0.5 | GO:1904263 | positive regulation of TORC1 signaling(GO:1904263) |
0.0 | 0.5 | GO:0070816 | phosphorylation of RNA polymerase II C-terminal domain(GO:0070816) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.1 | 0.9 | GO:0089701 | U2AF(GO:0089701) |
0.1 | 0.9 | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276) |
0.0 | 0.7 | GO:0090665 | dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665) |
0.0 | 0.6 | GO:1902562 | NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562) |
0.0 | 0.6 | GO:0031083 | BLOC-1 complex(GO:0031083) |
0.1 | 0.5 | GO:0097224 | sperm connecting piece(GO:0097224) |
0.1 | 0.5 | GO:0000439 | core TFIIH complex(GO:0000439) |
0.0 | 0.5 | GO:0005876 | spindle microtubule(GO:0005876) |
0.1 | 0.4 | GO:0043527 | tRNA methyltransferase complex(GO:0043527) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 0.9 | GO:0030628 | pre-mRNA 3'-splice site binding(GO:0030628) |
0.0 | 0.8 | GO:0015026 | coreceptor activity(GO:0015026) |
0.0 | 0.7 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) |
0.2 | 0.5 | GO:0032027 | myosin light chain binding(GO:0032027) |
0.0 | 0.5 | GO:0043028 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) cysteine-type endopeptidase regulator activity involved in apoptotic process(GO:0043028) |
0.0 | 0.5 | GO:0031386 | protein tag(GO:0031386) |
0.0 | 0.5 | GO:0097602 | cullin family protein binding(GO:0097602) |
0.0 | 0.5 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.1 | 0.4 | GO:0005128 | erythropoietin receptor binding(GO:0005128) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 0.6 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
0.0 | 0.5 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.0 | 0.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 0.4 | REACTOME NUCLEAR EVENTS KINASE AND TRANSCRIPTION FACTOR ACTIVATION | Genes involved in Nuclear Events (kinase and transcription factor activation) |
0.0 | 0.3 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 0.1 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
0.0 | 0.1 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |