PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxd11a | dr11_v1_chr9_-_1978090_1978090 | -0.83 | 1.2e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_40009446 Show fit | 6.55 |
ENSDART00000087422
|
amine oxidase, copper containing 1 |
|
chr23_+_27068225 Show fit | 4.99 |
ENSDART00000054238
|
major intrinsic protein of lens fiber a |
|
chr11_+_30244356 Show fit | 4.53 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr14_-_33613794 Show fit | 3.90 |
ENSDART00000010022
|
X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound |
|
chr24_+_402493 Show fit | 3.63 |
ENSDART00000036472
|
zgc:110852 |
|
chr7_-_26457208 Show fit | 3.44 |
ENSDART00000173519
|
zgc:172079 |
|
chr16_-_28658341 Show fit | 3.40 |
ENSDART00000148456
|
ATP-binding cassette, sub-family B (MDR/TAP), member 4 |
|
chr24_+_40529346 Show fit | 3.38 |
ENSDART00000168548
|
|
|
chr24_-_6158933 Show fit | 3.13 |
ENSDART00000021609
|
glutamate decarboxylase 2 |
|
chr2_+_21128391 Show fit | 2.94 |
ENSDART00000136814
|
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 6.5 | GO:0046677 | response to antibiotic(GO:0046677) |
0.7 | 6.5 | GO:0006833 | water transport(GO:0006833) |
0.1 | 4.0 | GO:0009636 | response to toxic substance(GO:0009636) |
0.1 | 3.2 | GO:0015914 | phospholipid transport(GO:0015914) |
1.0 | 3.1 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.0 | 2.9 | GO:0042157 | lipoprotein metabolic process(GO:0042157) |
0.4 | 2.6 | GO:0097250 | mitochondrial respiratory chain supercomplex assembly(GO:0097250) |
0.0 | 2.6 | GO:0006096 | glycolytic process(GO:0006096) |
0.8 | 2.5 | GO:0010430 | fatty acid omega-oxidation(GO:0010430) |
0.1 | 2.4 | GO:0006828 | manganese ion transport(GO:0006828) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.0 | 2.4 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 2.3 | GO:0034703 | cation channel complex(GO:0034703) |
0.0 | 2.2 | GO:0030424 | axon(GO:0030424) |
0.0 | 2.1 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
0.1 | 1.7 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.7 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 1.5 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.2 | 1.4 | GO:0097225 | sperm midpiece(GO:0097225) |
0.1 | 1.4 | GO:0044666 | MLL3/4 complex(GO:0044666) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 6.5 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.6 | 5.2 | GO:0015250 | water channel activity(GO:0015250) |
0.1 | 3.9 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
0.0 | 3.8 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
1.1 | 3.4 | GO:0015562 | protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562) |
1.0 | 3.1 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.1 | 2.9 | GO:0016307 | phosphatidylinositol phosphate kinase activity(GO:0016307) |
0.4 | 2.6 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 2.4 | GO:0015279 | store-operated calcium channel activity(GO:0015279) |
0.1 | 2.3 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 1.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.1 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.8 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.6 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.5 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 0.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.3 | 2.3 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 2.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.0 | 2.0 | REACTOME TOLL RECEPTOR CASCADES | Genes involved in Toll Receptor Cascades |
0.1 | 1.7 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 1.7 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
0.1 | 1.4 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.4 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.4 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 1.3 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |