PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxd12a | dr11_v1_chr9_-_1986014_1986014 | 0.78 | 9.4e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_6065416 Show fit | 1.83 |
ENSDART00000037698
|
uridine-cytidine kinase 2b |
|
chr21_-_22357985 Show fit | 1.37 |
ENSDART00000101751
|
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase |
|
chr21_+_20715020 Show fit | 1.34 |
ENSDART00000015224
|
growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 |
|
chr11_+_2198831 Show fit | 1.29 |
ENSDART00000160515
|
homeobox C6b |
|
chr8_+_8937723 Show fit | 1.29 |
ENSDART00000145970
|
si:dkey-83k24.5 |
|
chr19_-_31007417 Show fit | 1.26 |
ENSDART00000048144
|
retinoblastoma binding protein 4 |
|
chr17_-_31695217 Show fit | 1.23 |
ENSDART00000104332
ENSDART00000143090 |
lin-52 DREAM MuvB core complex component |
|
chr25_+_18964782 Show fit | 1.18 |
ENSDART00000017299
|
thymine DNA glycosylase, tandem duplicate 1 |
|
chr19_+_7424347 Show fit | 1.15 |
ENSDART00000004622
|
splicing factor 3b, subunit 4 |
|
chr17_+_17764979 Show fit | 1.15 |
ENSDART00000105013
|
alkB homolog 1, histone H2A dioxygenase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
0.0 | 2.1 | GO:0016575 | histone deacetylation(GO:0016575) |
0.1 | 1.4 | GO:1901655 | cellular response to ketone(GO:1901655) |
0.1 | 1.3 | GO:0000185 | activation of MAPKKK activity(GO:0000185) |
0.1 | 1.3 | GO:0015781 | pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481) |
0.0 | 1.3 | GO:0048538 | thymus development(GO:0048538) |
0.0 | 1.3 | GO:0031101 | fin regeneration(GO:0031101) |
0.3 | 1.2 | GO:1990167 | protein K27-linked deubiquitination(GO:1990167) |
0.1 | 1.2 | GO:0006285 | base-excision repair, AP site formation(GO:0006285) |
0.1 | 1.2 | GO:0048026 | positive regulation of mRNA splicing, via spliceosome(GO:0048026) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 2.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 1.9 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.3 | 1.3 | GO:0033186 | CAF-1 complex(GO:0033186) |
0.0 | 1.3 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 1.3 | GO:0000313 | organellar ribosome(GO:0000313) mitochondrial ribosome(GO:0005761) |
0.1 | 1.2 | GO:0090568 | nuclear transcriptional repressor complex(GO:0090568) |
0.1 | 1.2 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.2 | 1.0 | GO:1902636 | kinociliary basal body(GO:1902636) |
0.2 | 1.0 | GO:0071006 | U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0019843 | rRNA binding(GO:0019843) |
0.0 | 1.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.3 | 1.4 | GO:0003958 | NADPH-hemoprotein reductase activity(GO:0003958) |
0.0 | 1.4 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.1 | 1.3 | GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165) |
0.0 | 1.3 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
0.1 | 1.2 | GO:0000700 | mismatch base pair DNA N-glycosylase activity(GO:0000700) pyrimidine-specific mismatch base pair DNA N-glycosylase activity(GO:0008263) |
0.0 | 1.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.3 | 1.1 | GO:0035516 | oxidative DNA demethylase activity(GO:0035516) |
0.1 | 1.1 | GO:0032041 | histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 2.4 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 1.4 | PID ATM PATHWAY | ATM pathway |
0.0 | 0.9 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 0.7 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 0.6 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.0 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.5 | PID IL1 PATHWAY | IL1-mediated signaling events |
0.0 | 0.1 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.1 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 1.5 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.0 | 1.4 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.0 | 1.1 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 1.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.0 | 0.8 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 0.7 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.7 | REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 3 PROMOTER | Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter |
0.0 | 0.7 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |