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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxd3a

Z-value: 0.22

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Transcription factors associated with hoxd3a

Gene Symbol Gene ID Gene Info
hoxd3a
ENSDARG00000059280 homeobox D3a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd3adr11_v1_chr9_-_1959917_1959917-0.483.6e-02Click!

Activity profile of hoxd3a motif

Sorted Z-values of hoxd3a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_+_35484070 0.45 ENSDART00000026234
ENSDART00000141675
mep1a.2
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr19_-_6988837 0.38 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr22_+_28320792 0.33 ENSDART00000160562
ENSDART00000164138
impg2b
impg2b
interphotoreceptor matrix proteoglycan 2b
interphotoreceptor matrix proteoglycan 2b
chr23_+_579893 0.30 ENSDART00000189098
BX323461.1

chr9_-_21918963 0.27 ENSDART00000090782
lmo7a
LIM domain 7a
chr18_+_9362455 0.27 ENSDART00000187025
sema3ab
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab
chr16_+_14707960 0.26 ENSDART00000137912
col14a1a
collagen, type XIV, alpha 1a
chr21_+_8427059 0.23 ENSDART00000143151
dennd1a
DENN/MADD domain containing 1A
chr22_-_21897203 0.22 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
gna11a
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr2_-_21819421 0.22 ENSDART00000121586
chd7
chromodomain helicase DNA binding protein 7
chr6_+_3280939 0.21 ENSDART00000151359
kdm4aa
lysine (K)-specific demethylase 4A, genome duplicate a
chr8_-_53166975 0.20 ENSDART00000114683
rbsn
rabenosyn, RAB effector
chr13_-_7233811 0.19 ENSDART00000162026
ninl
ninein-like
chr14_-_33481428 0.19 ENSDART00000147059
ENSDART00000140001
ENSDART00000124242
ENSDART00000164836
ENSDART00000190104
ENSDART00000186833
ENSDART00000180873
lamp2
lysosomal-associated membrane protein 2
chr1_+_52392511 0.19 ENSDART00000144025
si:ch211-217k17.8
si:ch211-217k17.8
chr13_-_44630111 0.18 ENSDART00000110092
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1
chr14_-_2933185 0.17 ENSDART00000161677
ENSDART00000162446
ENSDART00000109378
si:dkey-201i24.6
si:dkey-201i24.6
chr3_-_34084387 0.17 ENSDART00000155365
ighv4-3
immunoglobulin heavy variable 4-3
chr11_+_13058613 0.16 ENSDART00000161532
zfyve9b
zinc finger, FYVE domain containing 9b
chr20_-_7072487 0.15 ENSDART00000145954
si:ch211-121a2.2
si:ch211-121a2.2
chr8_-_50888806 0.14 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr6_-_57539141 0.13 ENSDART00000156967
itcha
itchy E3 ubiquitin protein ligase a
chr1_-_58036509 0.13 ENSDART00000081122
COLGALT1
si:ch211-114l13.7
chr17_-_40956035 0.12 ENSDART00000124715
si:dkey-16j16.4
si:dkey-16j16.4
chr4_+_47636303 0.12 ENSDART00000167272
ENSDART00000166961
BX324142.1

chr4_+_73085993 0.11 ENSDART00000165749
si:ch73-170d6.2
si:ch73-170d6.2
chr4_+_58576146 0.11 ENSDART00000164911
si:ch211-212k5.4
si:ch211-212k5.4
chr5_-_3684402 0.11 ENSDART00000184354
FO704648.1

chr8_-_30979494 0.11 ENSDART00000138959
si:ch211-251j10.3
si:ch211-251j10.3
chr10_+_43039947 0.11 ENSDART00000193434
atg10
ATG10 autophagy related 10 homolog (S. cerevisiae)
chr16_+_45424907 0.11 ENSDART00000134471
phf1
PHD finger protein 1
chr11_+_2391469 0.10 ENSDART00000182121
igfbp6a
insulin-like growth factor binding protein 6a
chr19_-_10971230 0.10 ENSDART00000166196
LO018584.1

chr2_-_38284648 0.10 ENSDART00000148281
ENSDART00000132621
si:ch211-14a17.7
si:ch211-14a17.7
chr7_-_12464412 0.09 ENSDART00000178723
adamtsl3
ADAMTS-like 3
chr19_-_14155781 0.09 ENSDART00000169232
nr0b2b
nuclear receptor subfamily 0, group B, member 2b
chr8_+_22405477 0.09 ENSDART00000148267
si:dkey-23c22.7
si:dkey-23c22.7
chr2_-_16380283 0.09 ENSDART00000149992
si:dkey-231j24.3
si:dkey-231j24.3
chr16_+_5251768 0.08 ENSDART00000144558
plecb
plectin b
chr13_-_35808904 0.08 ENSDART00000171667
map3k4
mitogen-activated protein kinase kinase kinase 4
chr22_+_29113796 0.08 ENSDART00000150264
pla2g6
phospholipase A2, group VI (cytosolic, calcium-independent)
chr17_-_37054959 0.07 ENSDART00000151921
dnmt3ab
DNA (cytosine-5-)-methyltransferase 3 alpha b
chr2_+_54327160 0.07 ENSDART00000182320
LO018508.1

chr23_-_1348933 0.07 ENSDART00000168981
CABZ01078120.1

chr15_+_5360407 0.07 ENSDART00000110420
or112-1
odorant receptor, family A, subfamily 112, member 1
chr7_-_46777876 0.07 ENSDART00000193954
tshz3b
teashirt zinc finger homeobox 3b
chr15_+_41027466 0.07 ENSDART00000075940
mtnr1ba
melatonin receptor type 1Ba
chr20_-_9095105 0.06 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr8_-_25034411 0.06 ENSDART00000135973
nfyal
nuclear transcription factor Y, alpha, like
chr14_-_48961056 0.06 ENSDART00000124192
si:dkeyp-121d2.7
si:dkeyp-121d2.7
chr21_-_35419486 0.06 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr16_+_45425181 0.05 ENSDART00000168591
phf1
PHD finger protein 1
chr12_+_13405445 0.05 ENSDART00000089042
kcnh4b
potassium voltage-gated channel, subfamily H (eag-related), member 4b
chr1_+_56755536 0.05 ENSDART00000157727
CABZ01049361.1

chr19_+_2631565 0.05 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr3_+_30500968 0.05 ENSDART00000103447
si:dkey-13n23.3
si:dkey-13n23.3
chr2_-_39558643 0.04 ENSDART00000139860
ENSDART00000145231
ENSDART00000141721
cbln7
cerebellin 7
chr2_-_28671139 0.04 ENSDART00000165272
ENSDART00000164657
dhcr7
7-dehydrocholesterol reductase
chr19_+_11217279 0.04 ENSDART00000181859
si:ch73-109i22.2
si:ch73-109i22.2
chr5_+_28160503 0.04 ENSDART00000051516
tacr1a
tachykinin receptor 1a
chr5_+_66433287 0.04 ENSDART00000170757
kntc1
kinetochore associated 1
chr5_-_38094130 0.04 ENSDART00000131831
si:ch211-284e13.4
si:ch211-284e13.4
chr24_+_36204028 0.03 ENSDART00000063832
ENSDART00000155260
rbbp8
retinoblastoma binding protein 8
chr17_+_23298928 0.02 ENSDART00000153652
zgc:165461
zgc:165461
chr10_+_39084354 0.02 ENSDART00000158245
si:ch73-1a9.3
si:ch73-1a9.3
chr8_+_25034544 0.02 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr11_-_25777318 0.02 ENSDART00000079328
plch2b
phospholipase C, eta 2b
chr20_-_48898560 0.02 ENSDART00000163071
xrn2
5'-3' exoribonuclease 2
chr4_-_71210030 0.02 ENSDART00000186473
si:ch211-205a14.7
si:ch211-205a14.7
chr18_+_17827149 0.02 ENSDART00000190237
ENSDART00000189345
ZNF423
si:ch211-216l23.1
chr20_-_46362606 0.02 ENSDART00000153087
bmf2
BCL2 modifying factor 2
chr15_+_31899312 0.02 ENSDART00000155315
frya
furry homolog a (Drosophila)
chr14_+_30762131 0.02 ENSDART00000145039
si:ch211-145o7.3
si:ch211-145o7.3
chr3_+_27798094 0.01 ENSDART00000075100
ENSDART00000151437
carhsp1
calcium regulated heat stable protein 1
chr5_-_28109416 0.01 ENSDART00000042002
si:ch211-48m9.1
si:ch211-48m9.1
chr6_+_41191482 0.01 ENSDART00000000877
opn1mw3
opsin 1 (cone pigments), medium-wave-sensitive, 3
chr8_-_22274222 0.00 ENSDART00000131805
nphp4
nephronophthisis 4
chr12_+_30265802 0.00 ENSDART00000182412
afap1l2
actin filament associated protein 1-like 2
chr10_+_6884627 0.00 ENSDART00000125262
ENSDART00000121729
ENSDART00000105384
ddx4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd3a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0048755 branching morphogenesis of a nerve(GO:0048755)
0.0 0.2 GO:0034454 microtubule anchoring at centrosome(GO:0034454)
0.0 0.2 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.2 GO:0009303 rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.0 0.0 GO:0071314 response to cocaine(GO:0042220) cellular response to alkaloid(GO:0071312) cellular response to cocaine(GO:0071314)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0031310 integral component of vacuolar membrane(GO:0031166) intrinsic component of vacuolar membrane(GO:0031310)
0.0 0.3 GO:0033165 interphotoreceptor matrix(GO:0033165)
0.0 0.3 GO:0005614 interstitial matrix(GO:0005614)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0019777 Atg12 transferase activity(GO:0019777)
0.0 0.2 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.0 0.3 GO:0038191 neuropilin binding(GO:0038191)
0.0 0.2 GO:0051864 histone demethylase activity (H3-K36 specific)(GO:0051864)
0.0 0.1 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.0 0.0 GO:0016496 substance P receptor activity(GO:0016496)
0.0 0.1 GO:0008502 melatonin receptor activity(GO:0008502)