PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ikzf1 | dr11_v1_chr13_-_15986871_15986871 | -0.78 | 7.6e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_+_29161609 Show fit | 3.30 |
ENSDART00000180752
|
pyruvate kinase M1/2b |
|
chr7_-_8416750 Show fit | 2.05 |
ENSDART00000181857
|
jacalin 1 |
|
chr5_-_41831646 Show fit | 1.93 |
ENSDART00000134326
|
si:dkey-65b12.6 |
|
chr17_+_25414033 Show fit | 1.90 |
ENSDART00000001691
|
L-threonine dehydrogenase 2 |
|
chr5_-_71722257 Show fit | 1.90 |
ENSDART00000013404
|
adenylate kinase 1 |
|
chr21_+_7582036 Show fit | 1.74 |
ENSDART00000135485
ENSDART00000027268 |
orthopedia homeobox a |
|
chr7_+_39386982 Show fit | 1.63 |
ENSDART00000146702
|
troponin I type 2b (skeletal, fast), tandem duplicate 2 |
|
chr3_+_25154078 Show fit | 1.61 |
ENSDART00000156973
|
si:ch211-256m1.8 |
|
chr2_-_34555945 Show fit | 1.59 |
ENSDART00000056671
|
bone morphogenetic protein/retinoic acid inducible neural-specific 2 |
|
chr5_+_32222303 Show fit | 1.55 |
ENSDART00000051362
|
myosin heavy chain 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | GO:0006096 | glycolytic process(GO:0006096) |
0.0 | 2.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.3 | 1.9 | GO:0009180 | ADP biosynthetic process(GO:0006172) purine nucleoside diphosphate biosynthetic process(GO:0009136) purine ribonucleoside diphosphate biosynthetic process(GO:0009180) |
0.2 | 1.9 | GO:0006566 | threonine metabolic process(GO:0006566) threonine catabolic process(GO:0006567) |
0.3 | 1.7 | GO:0021767 | mammillary body development(GO:0021767) social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703) |
0.0 | 1.7 | GO:0007218 | neuropeptide signaling pathway(GO:0007218) |
0.2 | 1.6 | GO:0071300 | cellular response to retinoic acid(GO:0071300) |
0.0 | 1.6 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.2 | 1.4 | GO:0032287 | peripheral nervous system myelin maintenance(GO:0032287) |
0.1 | 1.4 | GO:0061718 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 2.9 | GO:0044297 | cell body(GO:0044297) |
0.0 | 1.9 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 1.7 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 1.6 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.6 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 1.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 1.5 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.0 | 1.5 | GO:0099572 | postsynaptic specialization(GO:0099572) |
0.1 | 1.4 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 4.4 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.3 | 2.3 | GO:0016934 | extracellular-glycine-gated ion channel activity(GO:0016933) extracellular-glycine-gated chloride channel activity(GO:0016934) |
0.4 | 1.9 | GO:0008743 | L-threonine 3-dehydrogenase activity(GO:0008743) |
0.1 | 1.9 | GO:0004017 | adenylate kinase activity(GO:0004017) |
0.0 | 1.9 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.0 | 1.8 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.3 | 1.6 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
0.0 | 1.6 | GO:0016247 | channel regulator activity(GO:0016247) |
0.1 | 1.4 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.3 | 1.3 | GO:0005521 | lamin binding(GO:0005521) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 1.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 1.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 1.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 1.1 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.8 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.0 | 0.5 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 1.8 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
0.0 | 1.8 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.1 | 1.3 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.1 | 1.1 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.1 | 1.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 1.0 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.1 | 0.9 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 0.9 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 0.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |