PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
IKZF2 | dr11_v1_chr9_-_40073255_40073255 | -0.54 | 1.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_26304386 Show fit | 1.45 |
ENSDART00000175416
|
otospiralin |
|
chr7_+_39386982 Show fit | 1.44 |
ENSDART00000146702
|
troponin I type 2b (skeletal, fast), tandem duplicate 2 |
|
chr3_-_61203203 Show fit | 1.30 |
ENSDART00000171787
|
parvalbumin 1 |
|
chr17_+_20204122 Show fit | 1.30 |
ENSDART00000078672
|
gonadotropin-releasing hormone 3 |
|
chr2_+_45191049 Show fit | 1.29 |
ENSDART00000165392
|
chemokine (C-C motif) ligand 20a, duplicate 3 |
|
chr12_-_30844304 Show fit | 1.28 |
ENSDART00000146367
|
crystallin, gamma MX, like 2 |
|
chr21_+_25187210 Show fit | 1.28 |
ENSDART00000101147
ENSDART00000167528 |
si:dkey-183i3.5 |
|
chr25_-_18470695 Show fit | 1.26 |
ENSDART00000034377
|
carboxypeptidase A5 |
|
chr22_-_20011476 Show fit | 1.23 |
ENSDART00000093312
ENSDART00000093310 |
cugbp, Elav-like family member 5a |
|
chr23_-_32162810 Show fit | 1.17 |
ENSDART00000155905
|
nuclear receptor subfamily 4, group A, member 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 1.8 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 1.6 | GO:0007605 | sensory perception of sound(GO:0007605) |
0.0 | 1.5 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.0 | 1.4 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
0.1 | 1.2 | GO:0071376 | response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376) |
0.1 | 1.2 | GO:0006599 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.1 | 1.2 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.0 | 1.2 | GO:0006376 | mRNA splice site selection(GO:0006376) |
0.0 | 1.2 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 2.2 | GO:0031045 | dense core granule(GO:0031045) |
0.0 | 1.5 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 1.3 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 1.2 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 1.2 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 1.1 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 1.0 | GO:0005776 | autophagosome(GO:0005776) |
0.0 | 1.0 | GO:0033267 | axon part(GO:0033267) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 1.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 1.5 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
0.4 | 1.3 | GO:0031530 | gonadotropin hormone-releasing hormone activity(GO:0005183) gonadotropin-releasing hormone receptor binding(GO:0031530) |
0.0 | 1.3 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.1 | 1.2 | GO:0035259 | glucocorticoid receptor binding(GO:0035259) |
0.1 | 1.2 | GO:0016775 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.0 | 1.2 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.0 | 1.1 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.1 | 0.9 | GO:0004062 | aryl sulfotransferase activity(GO:0004062) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.6 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.5 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.0 | 0.4 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.4 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.2 | PID NECTIN PATHWAY | Nectin adhesion pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.0 | 1.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.1 | 0.8 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.1 | 0.8 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 0.8 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.1 | 0.6 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.6 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.0 | 0.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.1 | 0.4 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.0 | 0.4 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |