PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
insm1b | dr11_v1_chr17_+_41463942_41463942 | 0.27 | 2.6e-01 | Click! |
insm1a | dr11_v1_chr20_-_48485354_48485354 | 0.18 | 4.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_4683325 Show fit | 2.94 |
ENSDART00000152771
|
si:ch211-255p10.3 |
|
chr24_+_23959487 Show fit | 2.80 |
ENSDART00000080487
|
homogentisate 1,2-dioxygenase |
|
chr18_+_642889 Show fit | 2.63 |
ENSDART00000189007
|
|
|
chr5_+_36932718 Show fit | 2.31 |
ENSDART00000037879
|
cone-rod homeobox |
|
chr7_+_73397283 Show fit | 2.18 |
ENSDART00000174390
|
|
|
chr8_+_1082100 Show fit | 2.03 |
ENSDART00000149276
|
leucine zipper, putative tumor suppressor family member 3b |
|
chr1_-_21599219 Show fit | 1.99 |
ENSDART00000148327
|
ADAMTS-like 7 |
|
chr8_-_20838342 Show fit | 1.95 |
ENSDART00000141345
|
si:ch211-133l5.7 |
|
chr21_+_25660613 Show fit | 1.92 |
ENSDART00000134017
|
si:dkey-17e16.15 |
|
chr1_+_19332837 Show fit | 1.86 |
ENSDART00000078594
|
tyrosinase-related protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 5.1 | GO:0006559 | L-phenylalanine metabolic process(GO:0006558) L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process(GO:1902221) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222) |
0.1 | 2.9 | GO:0006825 | copper ion transport(GO:0006825) |
0.0 | 2.3 | GO:0042462 | eye photoreceptor cell development(GO:0042462) |
0.1 | 2.0 | GO:0061001 | regulation of dendritic spine morphogenesis(GO:0061001) |
0.4 | 1.9 | GO:0097066 | response to thyroid hormone(GO:0097066) |
0.1 | 1.8 | GO:0048769 | sarcomerogenesis(GO:0048769) |
0.2 | 1.7 | GO:2001256 | regulation of store-operated calcium entry(GO:2001256) |
0.2 | 1.6 | GO:0019336 | phenol-containing compound catabolic process(GO:0019336) catechol-containing compound catabolic process(GO:0019614) catecholamine catabolic process(GO:0042424) |
0.1 | 1.4 | GO:2000601 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.0 | 1.3 | GO:0006884 | cell volume homeostasis(GO:0006884) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0014069 | postsynaptic density(GO:0014069) |
0.1 | 2.9 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 2.7 | GO:0000786 | nucleosome(GO:0000786) |
0.2 | 1.9 | GO:0045009 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.0 | 1.6 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 1.6 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 1.4 | GO:0031209 | SCAR complex(GO:0031209) |
0.2 | 1.0 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.1 | 1.0 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.1 | 0.8 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.9 | GO:0016531 | copper chaperone activity(GO:0016531) |
0.1 | 2.8 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.0 | 2.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 2.0 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 1.8 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.3 | 1.7 | GO:0035256 | G-protein coupled glutamate receptor binding(GO:0035256) |
0.4 | 1.6 | GO:0016206 | catechol O-methyltransferase activity(GO:0016206) |
0.0 | 1.6 | GO:0044325 | ion channel binding(GO:0044325) |
0.1 | 1.5 | GO:0033691 | sialic acid binding(GO:0033691) |
0.2 | 1.4 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 1.2 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 1.2 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.7 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.6 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.0 | 0.2 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 0.2 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.0 | 1.6 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 1.2 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 0.8 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.8 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 0.7 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 0.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 0.6 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
0.0 | 0.6 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 0.4 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |