PRJEB1986: zebrafish developmental stages transcriptome
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_5523690 Show fit | 1.59 |
ENSDART00000027304
|
mitogen-activated protein kinase 12b |
|
chr9_+_37754845 Show fit | 1.29 |
ENSDART00000100592
|
protein disulfide isomerase family A, member 5 |
|
chr19_+_7115223 Show fit | 1.15 |
ENSDART00000001359
|
proteasome subunit beta 12 |
|
chr3_-_12026741 Show fit | 1.01 |
ENSDART00000132238
|
cilia and flagella associated protein 70 |
|
chr3_-_36127234 Show fit | 1.00 |
ENSDART00000130917
|
coilin p80 |
|
chr4_-_12795030 Show fit | 0.99 |
ENSDART00000150427
|
beta-2-microglobulin |
|
chr17_+_25833947 Show fit | 0.96 |
ENSDART00000044328
ENSDART00000154604 |
acyl-CoA synthetase short chain family member 1 |
|
chr15_-_16384184 Show fit | 0.91 |
ENSDART00000154504
|
family with sequence similarity 222, member Bb |
|
chr14_+_36414856 Show fit | 0.87 |
ENSDART00000123343
ENSDART00000015761 |
nei-like DNA glycosylase 3 |
|
chr21_-_26715270 Show fit | 0.84 |
ENSDART00000053794
|
barrier to autointegration factor 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.1 | 1.2 | GO:0034122 | negative regulation of toll-like receptor signaling pathway(GO:0034122) |
0.2 | 1.0 | GO:0030576 | nuclear body organization(GO:0030575) Cajal body organization(GO:0030576) |
0.2 | 1.0 | GO:0006083 | acetate metabolic process(GO:0006083) acetyl-CoA biosynthetic process from acetate(GO:0019427) |
0.0 | 0.9 | GO:0006289 | nucleotide-excision repair(GO:0006289) |
0.3 | 0.8 | GO:1901836 | regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter(GO:1901836) |
0.0 | 0.8 | GO:0006825 | copper ion transport(GO:0006825) |
0.0 | 0.8 | GO:0030261 | chromosome condensation(GO:0030261) |
0.1 | 0.7 | GO:0030823 | regulation of cGMP metabolic process(GO:0030823) positive regulation of cGMP metabolic process(GO:0030825) regulation of cGMP biosynthetic process(GO:0030826) positive regulation of cGMP biosynthetic process(GO:0030828) regulation of guanylate cyclase activity(GO:0031282) positive regulation of guanylate cyclase activity(GO:0031284) |
0.1 | 0.7 | GO:0006686 | sphingomyelin biosynthetic process(GO:0006686) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0030496 | midbody(GO:0030496) |
0.1 | 1.7 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 1.2 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.0 | 1.2 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 1.0 | GO:0015030 | Cajal body(GO:0015030) |
0.1 | 0.7 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.1 | 0.7 | GO:0071797 | LUBAC complex(GO:0071797) |
0.1 | 0.6 | GO:0005880 | nuclear microtubule(GO:0005880) |
0.0 | 0.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 0.5 | GO:1990071 | TRAPPII protein complex(GO:1990071) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.0 | 1.6 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.0 | 1.2 | GO:0004697 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.2 | 1.0 | GO:0030620 | U2 snRNA binding(GO:0030620) |
0.2 | 1.0 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
0.1 | 0.9 | GO:0003906 | DNA-(apurinic or apyrimidinic site) lyase activity(GO:0003906) |
0.0 | 0.9 | GO:0051539 | 4 iron, 4 sulfur cluster binding(GO:0051539) |
0.1 | 0.7 | GO:0033188 | sphingomyelin synthase activity(GO:0033188) ceramide cholinephosphotransferase activity(GO:0047493) |
0.1 | 0.7 | GO:0004517 | nitric-oxide synthase activity(GO:0004517) |
0.0 | 0.7 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 1.0 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 0.9 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.0 | 0.5 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.2 | 1.0 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.2 | 1.0 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.1 | 0.8 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.0 | 0.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.7 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 0.5 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |
0.0 | 0.5 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.0 | 0.4 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.0 | 0.4 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |