PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irf2a | dr11_v1_chr1_+_39865748_39865753 | 0.57 | 1.1e-02 | Click! |
irf1b | dr11_v1_chr21_+_45626136_45626136 | 0.54 | 1.6e-02 | Click! |
irf2 | dr11_v1_chr14_-_4120636_4120636 | 0.21 | 3.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_30387930 Show fit | 3.32 |
ENSDART00000112827
|
si:dkey-18p12.4 |
|
chr8_-_40555340 Show fit | 2.72 |
ENSDART00000163348
|
NPC1 like intracellular cholesterol transporter 1 |
|
chr18_-_38270430 Show fit | 2.16 |
ENSDART00000139519
|
cell cycle associated protein 1b |
|
chr1_+_53377432 Show fit | 1.98 |
ENSDART00000177581
|
uncoupling protein 1 |
|
chr24_+_12945803 Show fit | 1.97 |
ENSDART00000005105
|
proteasome activator subunit 1 |
|
chr11_+_43043171 Show fit | 1.91 |
ENSDART00000180344
|
|
|
chr9_+_1138323 Show fit | 1.87 |
ENSDART00000190352
ENSDART00000190387 |
solute carrier family 15 (oligopeptide transporter), member 1a |
|
chr11_-_472547 Show fit | 1.78 |
ENSDART00000005923
|
zgc:77375 |
|
chr1_-_47089818 Show fit | 1.78 |
ENSDART00000132378
|
intersectin 1 (SH3 domain protein) |
|
chr11_-_23332592 Show fit | 1.78 |
ENSDART00000125024
|
golgi transport 1A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0017148 | negative regulation of translation(GO:0017148) |
0.0 | 2.9 | GO:0051607 | defense response to virus(GO:0051607) |
0.1 | 2.2 | GO:2000045 | regulation of G1/S transition of mitotic cell cycle(GO:2000045) |
0.2 | 2.0 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
0.0 | 2.0 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
0.2 | 1.9 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.0 | 1.8 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.0 | 1.7 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.0 | 1.7 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.4 | 1.6 | GO:0046654 | tetrahydrofolate biosynthetic process(GO:0046654) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.1 | 3.2 | GO:0005905 | clathrin-coated pit(GO:0005905) |
0.5 | 2.0 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.0 | 1.9 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.3 | 1.6 | GO:0032433 | filopodium tip(GO:0032433) |
0.3 | 1.5 | GO:1990071 | TRAPPII protein complex(GO:1990071) |
0.0 | 1.4 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 1.4 | GO:0000786 | nucleosome(GO:0000786) |
0.2 | 1.2 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.2 | 1.1 | GO:0033553 | rDNA heterochromatin(GO:0033553) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.0 | 4.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.8 | GO:0060090 | binding, bridging(GO:0060090) |
0.1 | 2.7 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.1 | 2.6 | GO:0070003 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.0 | 2.6 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.5 | 2.0 | GO:0017077 | oxidative phosphorylation uncoupler activity(GO:0017077) |
0.3 | 2.0 | GO:0061133 | endopeptidase activator activity(GO:0061133) |
0.1 | 2.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.3 | 1.9 | GO:0071916 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 2.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.0 | 1.4 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.0 | 0.9 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.9 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.7 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 0.5 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 0.4 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.4 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 0.4 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 2.3 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.2 | 2.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 2.0 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.1 | 1.9 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.2 | 1.5 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.1 | 1.5 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 1.4 | REACTOME INITIAL TRIGGERING OF COMPLEMENT | Genes involved in Initial triggering of complement |
0.0 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.1 | 0.9 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |