PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irf4b | dr11_v1_chr20_+_26556372_26556372 | -0.33 | 1.7e-01 | Click! |
irf4a | dr11_v1_chr2_-_879800_879800 | 0.03 | 9.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_68562464 Show fit | 0.88 |
ENSDART00000192954
|
|
|
chr16_+_46497149 Show fit | 0.83 |
ENSDART00000135151
ENSDART00000058324 |
rapunzel 4 |
|
chr9_-_23765480 Show fit | 0.80 |
ENSDART00000027212
|
si:ch211-219a4.6 |
|
chr9_+_23765587 Show fit | 0.78 |
ENSDART00000145120
|
si:ch211-219a4.3 |
|
chr15_-_29556757 Show fit | 0.75 |
ENSDART00000060049
|
heat shock protein 70 family, member 13 |
|
chr6_+_15762647 Show fit | 0.73 |
ENSDART00000127133
ENSDART00000128939 |
IQ motif containing with AAA domain 1 |
|
chr25_+_16646113 Show fit | 0.73 |
ENSDART00000110426
|
cat eye syndrome chromosome region, candidate 2 |
|
chr18_-_24988645 Show fit | 0.71 |
ENSDART00000136434
ENSDART00000085735 |
chromodomain helicase DNA binding protein 2 |
|
chr12_+_35650321 Show fit | 0.70 |
ENSDART00000190446
|
|
|
chr20_-_3911546 Show fit | 0.68 |
ENSDART00000169787
|
cnksr family member 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0006825 | copper ion transport(GO:0006825) |
0.1 | 1.0 | GO:0034122 | negative regulation of toll-like receptor signaling pathway(GO:0034122) |
0.3 | 0.8 | GO:0060843 | lymphatic endothelial cell fate commitment(GO:0060838) venous endothelial cell differentiation(GO:0060843) venous endothelial cell fate commitment(GO:0060845) |
0.1 | 0.8 | GO:0042026 | protein refolding(GO:0042026) |
0.0 | 0.7 | GO:0008585 | sex determination(GO:0007530) female gonad development(GO:0008585) |
0.0 | 0.7 | GO:0043044 | ATP-dependent chromatin remodeling(GO:0043044) |
0.1 | 0.6 | GO:0006370 | 7-methylguanosine mRNA capping(GO:0006370) |
0.0 | 0.6 | GO:0032098 | regulation of appetite(GO:0032098) |
0.1 | 0.5 | GO:0098795 | mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795) |
0.0 | 0.5 | GO:0042694 | muscle cell fate specification(GO:0042694) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.0 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.1 | 0.7 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.0 | 0.6 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
0.0 | 0.5 | GO:0043186 | P granule(GO:0043186) |
0.0 | 0.4 | GO:0000796 | condensin complex(GO:0000796) |
0.0 | 0.4 | GO:0044545 | NSL complex(GO:0044545) |
0.1 | 0.3 | GO:0043034 | costamere(GO:0043034) |
0.0 | 0.3 | GO:0009295 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
0.0 | 0.3 | GO:0032391 | photoreceptor connecting cilium(GO:0032391) |
0.0 | 0.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0004322 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.1 | 0.8 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.1 | 0.8 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.1 | 0.6 | GO:0008174 | mRNA methyltransferase activity(GO:0008174) |
0.0 | 0.6 | GO:0051378 | amine binding(GO:0043176) serotonin binding(GO:0051378) |
0.2 | 0.5 | GO:0032574 | 5'-3' RNA helicase activity(GO:0032574) |
0.1 | 0.4 | GO:0034450 | ubiquitin-ubiquitin ligase activity(GO:0034450) |
0.0 | 0.4 | GO:0004708 | MAP kinase kinase activity(GO:0004708) |
0.0 | 0.4 | GO:0001671 | ATPase activator activity(GO:0001671) |
0.0 | 0.4 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 0.8 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.4 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.0 | 0.4 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.3 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.0 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.0 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.0 | 0.8 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 0.6 | REACTOME SEROTONIN RECEPTORS | Genes involved in Serotonin receptors |
0.0 | 0.4 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 0.4 | REACTOME ACTIVATED TAK1 MEDIATES P38 MAPK ACTIVATION | Genes involved in activated TAK1 mediates p38 MAPK activation |
0.0 | 0.3 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.0 | 0.3 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.0 | 0.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.0 | 0.1 | REACTOME ACYL CHAIN REMODELLING OF PG | Genes involved in Acyl chain remodelling of PG |