PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irf5 | dr11_v1_chr4_-_13613148_13613148 | 0.63 | 3.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_36127234 Show fit | 1.33 |
ENSDART00000130917
|
coilin p80 |
|
chr19_+_14059349 Show fit | 1.31 |
ENSDART00000166230
|
trophoblast glycoprotein a |
|
chr18_-_16922905 Show fit | 1.29 |
ENSDART00000187165
|
WEE1 G2 checkpoint kinase |
|
chr25_+_27410352 Show fit | 1.26 |
ENSDART00000154362
|
protection of telomeres 1 homolog |
|
chr22_+_336256 Show fit | 1.20 |
ENSDART00000019155
|
B-cell translocation gene 2 |
|
chr25_+_16646113 Show fit | 1.18 |
ENSDART00000110426
|
cat eye syndrome chromosome region, candidate 2 |
|
chr16_-_32303835 Show fit | 1.17 |
ENSDART00000191408
|
MMS22-like, DNA repair protein |
|
chr24_-_37688398 Show fit | 1.15 |
ENSDART00000141414
|
zgc:112185 |
|
chr22_-_16291041 Show fit | 1.08 |
ENSDART00000021666
|
RNA 3'-terminal phosphate cyclase |
|
chr9_-_39968820 Show fit | 1.07 |
ENSDART00000100311
|
si:zfos-1425h8.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.0 | 1.6 | GO:0046890 | regulation of lipid biosynthetic process(GO:0046890) |
0.1 | 1.4 | GO:0035284 | central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284) |
0.3 | 1.3 | GO:0060829 | negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829) |
0.3 | 1.3 | GO:0030575 | nuclear body organization(GO:0030575) Cajal body organization(GO:0030576) |
0.1 | 1.3 | GO:0070475 | rRNA base methylation(GO:0070475) |
0.2 | 1.2 | GO:0051972 | regulation of telomerase activity(GO:0051972) |
0.1 | 1.2 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
0.1 | 1.2 | GO:0031297 | replication fork processing(GO:0031297) |
0.0 | 1.2 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.0 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.2 | 1.7 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
0.1 | 1.6 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.0 | 1.5 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.1 | 1.3 | GO:0015030 | Cajal body(GO:0015030) |
0.1 | 1.3 | GO:0000782 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.1 | 1.2 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.1 | 1.2 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 1.1 | GO:0031902 | late endosome membrane(GO:0031902) |
0.1 | 1.0 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0005109 | frizzled binding(GO:0005109) |
0.3 | 1.3 | GO:0010521 | telomerase inhibitor activity(GO:0010521) |
0.3 | 1.3 | GO:0030620 | U2 snRNA binding(GO:0030620) |
0.0 | 1.3 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.2 | 1.1 | GO:0016886 | ligase activity, forming phosphoric ester bonds(GO:0016886) |
0.1 | 1.0 | GO:0034450 | ubiquitin-ubiquitin ligase activity(GO:0034450) |
0.1 | 1.0 | GO:0048039 | ubiquinone binding(GO:0048039) |
0.1 | 1.0 | GO:0008320 | protein transmembrane transporter activity(GO:0008320) |
0.0 | 1.0 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.2 | 0.9 | GO:0070016 | armadillo repeat domain binding(GO:0070016) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 1.7 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 1.5 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 1.3 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 0.8 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 0.8 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.0 | 0.8 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.8 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.0 | 0.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 0.7 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | REACTOME MRNA PROCESSING | Genes involved in mRNA Processing |
0.0 | 1.7 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.1 | 1.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 1.3 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 1.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.0 | 1.0 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 0.9 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.0 | 0.9 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.1 | 0.8 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.1 | 0.8 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |