PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irx2a | dr11_v1_chr16_-_560574_560574 | 0.29 | 2.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_26304386 Show fit | 4.65 |
ENSDART00000175416
|
otospiralin |
|
chr5_-_4493502 Show fit | 2.37 |
ENSDART00000067593
ENSDART00000190221 |
zgc:153704 |
|
chr3_-_61203203 Show fit | 2.17 |
ENSDART00000171787
|
parvalbumin 1 |
|
chr14_+_32838110 Show fit | 1.95 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr8_-_18239494 Show fit | 1.83 |
ENSDART00000079989
ENSDART00000022959 |
guanylate kinase 1b |
|
chr1_-_44940830 Show fit | 1.53 |
ENSDART00000097500
ENSDART00000134464 ENSDART00000137216 |
transmembrane protein 176 |
|
chr23_-_28141419 Show fit | 1.52 |
ENSDART00000133039
|
tachykinin 3a |
|
chr6_-_54845083 Show fit | 1.39 |
ENSDART00000148815
|
cysteine and glycine-rich protein 1b |
|
chr7_-_73725701 Show fit | 1.38 |
ENSDART00000158525
|
calsequestrin 1b |
|
chr6_-_54845622 Show fit | 1.33 |
ENSDART00000048887
|
cysteine and glycine-rich protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0007605 | sensory perception of sound(GO:0007605) |
0.0 | 2.7 | GO:0045214 | sarcomere organization(GO:0045214) |
0.1 | 2.5 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.0 | 2.0 | GO:0006904 | vesicle docking involved in exocytosis(GO:0006904) |
0.2 | 1.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.0 | 1.6 | GO:0006749 | glutathione metabolic process(GO:0006749) |
0.4 | 1.5 | GO:0007217 | tachykinin receptor signaling pathway(GO:0007217) |
0.5 | 1.4 | GO:0014722 | regulation of skeletal muscle contraction by calcium ion signaling(GO:0014722) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809) |
0.1 | 1.2 | GO:1904103 | regulation of convergent extension involved in gastrulation(GO:1904103) |
0.0 | 1.2 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.5 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 2.7 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 1.5 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.2 | 1.4 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.0 | 1.3 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 1.0 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
0.0 | 0.9 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.1 | 0.8 | GO:0031307 | integral component of mitochondrial outer membrane(GO:0031307) |
0.0 | 0.6 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 0.6 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0042805 | actinin binding(GO:0042805) |
0.0 | 2.0 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.4 | 1.8 | GO:0004385 | guanylate kinase activity(GO:0004385) |
0.0 | 1.5 | GO:0004364 | glutathione transferase activity(GO:0004364) |
0.2 | 1.2 | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176) |
0.0 | 1.1 | GO:0008157 | protein phosphatase 1 binding(GO:0008157) |
0.3 | 1.0 | GO:0004092 | carnitine O-acetyltransferase activity(GO:0004092) |
0.1 | 1.0 | GO:0051117 | ATPase binding(GO:0051117) |
0.2 | 0.8 | GO:1990699 | palmitoleyl hydrolase activity(GO:1990699) |
0.1 | 0.7 | GO:0030955 | potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 0.7 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.7 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.5 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.0 | 0.3 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.2 | REACTOME GAP JUNCTION DEGRADATION | Genes involved in Gap junction degradation |
0.0 | 0.1 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.0 | 0.1 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |