PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irx3a | dr11_v1_chr7_+_36041509_36041509 | 0.70 | 8.7e-04 | Click! |
irx5b | dr11_v1_chr25_+_36152215_36152215 | 0.61 | 5.5e-03 | Click! |
irx5a | dr11_v1_chr7_-_35710263_35710263 | 0.52 | 2.2e-02 | Click! |
irx3b | dr11_v1_chr25_-_36492779_36492779 | 0.25 | 3.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_9538578 Show fit | 4.59 |
ENSDART00000066445
|
nudix (nucleoside diphosphate linked moiety X)-type motif 13 |
|
chr14_-_10617127 Show fit | 4.48 |
ENSDART00000154299
|
si:dkey-92i17.2 |
|
chr9_-_52598343 Show fit | 4.47 |
ENSDART00000167922
|
X-ray repair complementing defective repair in Chinese hamster cells 5 |
|
chr8_+_46641314 Show fit | 4.28 |
ENSDART00000113803
|
hairy-related 3 |
|
chr13_-_86847 Show fit | 4.02 |
ENSDART00000158062
|
polymerase (DNA directed), epsilon 2 |
|
chr17_+_51746830 Show fit | 3.77 |
ENSDART00000184230
|
ornithine decarboxylase 1 |
|
chr13_+_43247936 Show fit | 3.72 |
ENSDART00000126850
ENSDART00000165331 |
SPARC related modular calcium binding 2 |
|
chr8_-_20914829 Show fit | 3.64 |
ENSDART00000025356
|
HAUS augmin-like complex, subunit 5 |
|
chr13_+_36585399 Show fit | 3.55 |
ENSDART00000030211
|
glia maturation factor, beta |
|
chr10_-_42237304 Show fit | 3.49 |
ENSDART00000140341
|
transcription factor 7 like 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.0 | GO:0042254 | ribosome biogenesis(GO:0042254) |
0.1 | 7.6 | GO:0016579 | protein deubiquitination(GO:0016579) |
0.0 | 7.6 | GO:0008380 | RNA splicing(GO:0008380) |
0.1 | 6.3 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.2 | 5.2 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.1 | 5.1 | GO:0006376 | mRNA splice site selection(GO:0006376) |
0.0 | 5.1 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.1 | 4.9 | GO:0051225 | spindle assembly(GO:0051225) |
0.4 | 4.7 | GO:0051123 | RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123) |
0.9 | 4.5 | GO:0010332 | response to gamma radiation(GO:0010332) cellular response to gamma radiation(GO:0071480) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 26.3 | GO:0005739 | mitochondrion(GO:0005739) |
0.1 | 18.5 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 6.2 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.1 | 4.8 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 4.8 | GO:0005814 | centriole(GO:0005814) |
0.1 | 4.5 | GO:0030686 | 90S preribosome(GO:0030686) |
0.0 | 4.5 | GO:0005694 | chromosome(GO:0005694) |
0.2 | 4.1 | GO:0005685 | U1 snRNP(GO:0005685) |
1.0 | 4.0 | GO:0008622 | epsilon DNA polymerase complex(GO:0008622) |
0.0 | 4.0 | GO:0005654 | nucleoplasm(GO:0005654) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 14.3 | GO:0003723 | RNA binding(GO:0003723) |
0.1 | 10.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.4 | 8.9 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.1 | 8.8 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
0.0 | 8.5 | GO:0003924 | GTPase activity(GO:0003924) |
0.0 | 8.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 6.3 | GO:0101005 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.1 | 6.0 | GO:0000049 | tRNA binding(GO:0000049) |
0.0 | 6.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 5.7 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 9.2 | PID BARD1 PATHWAY | BARD1 signaling events |
0.3 | 7.0 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 6.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 6.0 | PID P73PATHWAY | p73 transcription factor network |
0.2 | 4.3 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 4.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 3.8 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.3 | 3.3 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.9 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.7 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.4 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.2 | 7.1 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.4 | 6.1 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.2 | 5.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.4 | 5.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.7 | 4.5 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.1 | 4.2 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.2 | 3.6 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |
0.2 | 3.2 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |