PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
isl1 | dr11_v1_chr5_-_40734045_40734045 | 0.23 | 3.4e-01 | Click! |
isl1l | dr11_v1_chr10_+_8680730_8680730 | -0.22 | 3.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_+_46941930 Show fit | 2.20 |
ENSDART00000056962
|
F-box protein 5 |
|
chr4_+_15968483 Show fit | 1.80 |
ENSDART00000101575
|
si:dkey-117n7.5 |
|
chr14_-_41478265 Show fit | 1.39 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
|
chr13_-_50624173 Show fit | 1.38 |
ENSDART00000184181
|
ventral homeobox |
|
chr12_-_13205854 Show fit | 1.37 |
ENSDART00000077829
|
pelota mRNA surveillance and ribosome rescue factor |
|
chr14_-_17072736 Show fit | 1.33 |
ENSDART00000106333
|
paired-like homeobox 2bb |
|
chr2_+_11685742 Show fit | 1.28 |
ENSDART00000138562
|
growth regulation by estrogen in breast cancer-like |
|
chr21_+_723998 Show fit | 1.28 |
ENSDART00000160956
|
ornithine decarboxylase antizyme 1b |
|
chr4_+_5506952 Show fit | 1.24 |
ENSDART00000032857
ENSDART00000160222 |
mitogen-activated protein kinase 11 |
|
chr2_-_17114852 Show fit | 1.24 |
ENSDART00000006549
|
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.4 | GO:0042661 | regulation of mesodermal cell fate specification(GO:0042661) |
0.6 | 2.2 | GO:0032790 | ribosome disassembly(GO:0032790) |
0.6 | 2.2 | GO:0051444 | negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667) |
0.1 | 1.8 | GO:0008608 | attachment of spindle microtubules to kinetochore(GO:0008608) |
0.1 | 1.4 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
0.3 | 1.3 | GO:0061549 | sympathetic ganglion development(GO:0061549) |
0.1 | 1.3 | GO:0030241 | skeletal muscle myosin thick filament assembly(GO:0030241) |
0.1 | 1.3 | GO:0006596 | polyamine biosynthetic process(GO:0006596) |
0.2 | 1.2 | GO:0010457 | centriole-centriole cohesion(GO:0010457) |
0.1 | 1.2 | GO:0071156 | regulation of cell cycle arrest(GO:0071156) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0005819 | spindle(GO:0005819) |
0.0 | 1.7 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 1.4 | GO:0031430 | M band(GO:0031430) |
0.0 | 1.4 | GO:0030286 | dynein complex(GO:0030286) |
0.0 | 1.2 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 1.2 | GO:0005814 | centriole(GO:0005814) |
0.0 | 1.1 | GO:0035861 | site of double-strand break(GO:0035861) |
0.0 | 1.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 1.1 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.2 | 1.0 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0004519 | endonuclease activity(GO:0004519) |
0.0 | 2.2 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
0.6 | 1.9 | GO:0055105 | ubiquitin-protein transferase inhibitor activity(GO:0055105) |
0.0 | 1.9 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 1.7 | GO:0070122 | isopeptidase activity(GO:0070122) |
0.1 | 1.5 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.0 | 1.4 | GO:0031490 | chromatin DNA binding(GO:0031490) |
0.3 | 1.3 | GO:0008073 | ornithine decarboxylase inhibitor activity(GO:0008073) |
0.2 | 1.2 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.2 | 1.2 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.0 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 1.2 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 1.2 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.1 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.7 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 0.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 0.6 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 0.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 1.5 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 1.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 1.2 | REACTOME P38MAPK EVENTS | Genes involved in p38MAPK events |
0.0 | 1.0 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 1.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.9 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |