PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
isl2a | dr11_v1_chr25_-_32751982_32751982 | -0.65 | 2.7e-03 | Click! |
isl2b | dr11_v1_chr7_+_29992889_29992889 | -0.25 | 3.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_24002503 Show fit | 1.95 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr11_+_24001993 Show fit | 1.75 |
ENSDART00000168215
|
chitinase, acidic.2 |
|
chr19_-_5125663 Show fit | 1.74 |
ENSDART00000005547
ENSDART00000132642 |
guanine nucleotide binding protein (G protein), beta polypeptide 3b |
|
chr6_-_12588044 Show fit | 1.54 |
ENSDART00000047896
|
solute carrier family 15 (oligopeptide transporter), member 1b |
|
chr9_+_2574122 Show fit | 1.53 |
ENSDART00000166326
ENSDART00000191822 |
si:ch73-167c12.2 |
|
chr2_-_293793 Show fit | 1.41 |
ENSDART00000082091
|
si:ch73-40a17.3 |
|
chr2_-_293036 Show fit | 1.29 |
ENSDART00000171629
|
si:ch73-40a17.3 |
|
chr16_-_28658341 Show fit | 1.08 |
ENSDART00000148456
|
ATP-binding cassette, sub-family B (MDR/TAP), member 4 |
|
chr6_+_54538948 Show fit | 1.07 |
ENSDART00000149270
|
tubby like protein 1b |
|
chr21_+_11385031 Show fit | 1.01 |
ENSDART00000040598
|
carboxyl ester lipase, tandem duplicate 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.6 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.2 | 1.5 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.0 | 1.3 | GO:0009636 | response to toxic substance(GO:0009636) |
0.0 | 1.2 | GO:0061512 | protein localization to cilium(GO:0061512) |
0.1 | 1.0 | GO:0097105 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.1 | 1.0 | GO:0018057 | peptidyl-lysine oxidation(GO:0018057) |
0.0 | 0.9 | GO:0006414 | translational elongation(GO:0006414) |
0.0 | 0.7 | GO:0051932 | synaptic transmission, GABAergic(GO:0051932) |
0.1 | 0.6 | GO:1900029 | positive regulation of ruffle assembly(GO:1900029) |
0.0 | 0.6 | GO:0006415 | translational termination(GO:0006415) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 0.7 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.0 | 0.7 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.6 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 0.6 | GO:0032587 | ruffle membrane(GO:0032587) |
0.1 | 0.4 | GO:1990513 | CLOCK-BMAL transcription complex(GO:1990513) |
0.0 | 0.4 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
0.0 | 0.4 | GO:0032420 | stereocilium(GO:0032420) |
0.0 | 0.3 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
0.0 | 0.2 | GO:0016012 | sarcoglycan complex(GO:0016012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.6 | GO:0004568 | chitinase activity(GO:0004568) |
0.0 | 2.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 1.7 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.2 | 1.5 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.4 | 1.1 | GO:0015462 | protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562) |
0.3 | 1.0 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.1 | 1.0 | GO:0004720 | protein-lysine 6-oxidase activity(GO:0004720) |
0.0 | 0.8 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.0 | 0.8 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.0 | 0.8 | GO:0042562 | hormone binding(GO:0042562) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.4 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.3 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.1 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.0 | 0.7 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.5 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.4 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 0.4 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.0 | 0.4 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.0 | 0.3 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.2 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |
0.0 | 0.2 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.0 | 0.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |