PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
jun | dr11_v1_chr20_+_15552657_15552657 | 0.92 | 3.8e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_48359259 Show fit | 3.33 |
ENSDART00000167353
|
shugoshin 1 |
|
chr5_-_20195350 Show fit | 2.49 |
ENSDART00000139675
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr20_-_26531850 Show fit | 2.40 |
ENSDART00000183317
ENSDART00000131994 |
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr20_-_26532167 Show fit | 2.39 |
ENSDART00000061914
|
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr20_+_28364742 Show fit | 2.37 |
ENSDART00000103355
|
ras homolog family member V |
|
chr16_+_27543893 Show fit | 2.27 |
ENSDART00000182421
|
si:ch211-197h24.6 |
|
chr20_-_25626198 Show fit | 2.24 |
ENSDART00000126716
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr23_-_21471022 Show fit | 1.90 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr11_-_24681292 Show fit | 1.82 |
ENSDART00000089601
|
olfactomedin-like 3b |
|
chr23_+_35714574 Show fit | 1.50 |
ENSDART00000164616
|
tubulin, alpha 1c |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.8 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.0 | 3.5 | GO:0006470 | protein dephosphorylation(GO:0006470) |
0.8 | 3.3 | GO:0071962 | mitotic sister chromatid cohesion, centromeric(GO:0071962) |
0.3 | 3.0 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.2 | 2.7 | GO:0001867 | complement activation, lectin pathway(GO:0001867) |
0.6 | 2.5 | GO:0055130 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.1 | 2.5 | GO:0048246 | macrophage chemotaxis(GO:0048246) |
0.8 | 2.4 | GO:0071896 | protein localization to adherens junction(GO:0071896) |
0.1 | 2.4 | GO:0007029 | endoplasmic reticulum organization(GO:0007029) |
0.8 | 2.3 | GO:0043576 | respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 3.3 | GO:0000776 | kinetochore(GO:0000776) |
0.1 | 2.3 | GO:0046930 | pore complex(GO:0046930) |
0.0 | 2.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.7 | 2.0 | GO:0030289 | protein phosphatase 4 complex(GO:0030289) |
0.4 | 1.8 | GO:0031510 | SUMO activating enzyme complex(GO:0031510) |
0.2 | 1.8 | GO:0008541 | proteasome regulatory particle, lid subcomplex(GO:0008541) |
0.0 | 1.7 | GO:0032587 | ruffle membrane(GO:0032587) |
0.0 | 1.5 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 1.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.9 | GO:0003924 | GTPase activity(GO:0003924) |
0.7 | 4.8 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.0 | 4.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.1 | 3.3 | GO:0003823 | antigen binding(GO:0003823) |
0.0 | 2.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.6 | 2.5 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.4 | 2.3 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
0.6 | 2.2 | GO:0004639 | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639) |
0.1 | 2.0 | GO:0070628 | proteasome binding(GO:0070628) |
0.0 | 1.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 1.2 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 1.1 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.1 | 0.9 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.8 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.1 | 0.7 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.6 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 0.5 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 3.0 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.0 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.1 | 1.5 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 1.0 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.1 | 1.0 | REACTOME DOWNREGULATION OF TGF BETA RECEPTOR SIGNALING | Genes involved in Downregulation of TGF-beta receptor signaling |
0.1 | 0.9 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.1 | 0.9 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 0.8 | REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1 | Genes involved in Regulation of AMPK activity via LKB1 |
0.0 | 0.8 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |