PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
junba | dr11_v1_chr1_-_51734524_51734535 | 0.71 | 7.3e-04 | Click! |
junbb | dr11_v1_chr3_-_7656059_7656059 | 0.42 | 7.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_12385308 Show fit | 9.70 |
ENSDART00000080927
|
synaptosomal-associated protein, 25b |
|
chr7_+_39385540 Show fit | 6.66 |
ENSDART00000139240
|
troponin I type 2b (skeletal, fast), tandem duplicate 2 |
|
chr15_-_34418525 Show fit | 6.39 |
ENSDART00000147582
|
alkylglycerol monooxygenase |
|
chr5_-_26118855 Show fit | 6.34 |
ENSDART00000009028
|
elastase 3 like |
|
chr4_-_16853464 Show fit | 6.13 |
ENSDART00000125743
ENSDART00000164570 |
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a |
|
chr2_-_43168292 Show fit | 5.36 |
ENSDART00000132588
|
cAMP responsive element modulator a |
|
chr15_+_45643787 Show fit | 5.32 |
ENSDART00000055995
ENSDART00000157750 |
S-antigen; retina and pineal gland (arrestin) b |
|
chr15_-_12319065 Show fit | 5.25 |
ENSDART00000162973
ENSDART00000170543 |
FXYD domain containing ion transport regulator 6 |
|
chr16_-_383664 Show fit | 5.18 |
ENSDART00000051693
|
iroquois homeobox 4a |
|
chr23_+_19590006 Show fit | 5.15 |
ENSDART00000021231
|
sarcolemma associated protein b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 9.7 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.0 | 9.5 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 7.7 | GO:0006936 | muscle contraction(GO:0006936) |
0.5 | 7.0 | GO:0035970 | peptidyl-threonine dephosphorylation(GO:0035970) |
0.3 | 6.9 | GO:0035435 | phosphate ion transmembrane transport(GO:0035435) |
0.1 | 6.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 6.6 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
1.3 | 6.4 | GO:0046485 | ether lipid metabolic process(GO:0046485) |
1.9 | 5.7 | GO:0097623 | potassium ion export(GO:0071435) potassium ion export across plasma membrane(GO:0097623) |
0.0 | 5.7 | GO:0043068 | positive regulation of cell death(GO:0010942) positive regulation of apoptotic process(GO:0043065) positive regulation of programmed cell death(GO:0043068) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 45.2 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 23.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.2 | 11.9 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
1.9 | 11.3 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.1 | 6.8 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.2 | 6.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 6.4 | GO:0030424 | axon(GO:0030424) |
0.0 | 6.2 | GO:0043005 | neuron projection(GO:0043005) |
0.5 | 5.7 | GO:0044295 | axonal growth cone(GO:0044295) |
0.7 | 5.3 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 11.6 | GO:0005509 | calcium ion binding(GO:0005509) |
0.3 | 10.2 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.2 | 9.3 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.1 | 9.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.3 | 8.8 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.0 | 8.2 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.1 | 8.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.2 | 7.8 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
0.5 | 7.0 | GO:0008330 | protein tyrosine/threonine phosphatase activity(GO:0008330) |
0.5 | 6.9 | GO:0005315 | inorganic phosphate transmembrane transporter activity(GO:0005315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.1 | 5.1 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.2 | 4.6 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
0.3 | 4.5 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.4 | 4.4 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.2 | 4.1 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.2 | 3.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 2.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.6 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 2.4 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 9.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 6.4 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 5.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.5 | 4.8 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.3 | 3.8 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.2 | 2.7 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.2 | 2.6 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.3 | 2.5 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.3 | 2.5 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 2.5 | REACTOME G ALPHA S SIGNALLING EVENTS | Genes involved in G alpha (s) signalling events |