PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
batf | dr11_v1_chr20_+_46572550_46572550 | -0.33 | 1.7e-01 | Click! |
jund | dr11_v1_chr2_-_56131312_56131312 | -0.31 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_42972599 Show fit | 2.06 |
ENSDART00000100751
|
proopiomelanocortin b |
|
chr3_-_26017592 Show fit | 1.81 |
ENSDART00000030890
|
heme oxygenase 1a |
|
chr3_-_26017831 Show fit | 1.60 |
ENSDART00000179982
|
heme oxygenase 1a |
|
chr16_-_24832038 Show fit | 1.36 |
ENSDART00000153731
|
si:dkey-79d12.5 |
|
chr7_-_26436436 Show fit | 1.31 |
ENSDART00000019035
ENSDART00000123395 |
hairy-related 8a |
|
chr22_+_16497670 Show fit | 1.27 |
ENSDART00000014330
|
immediate early response 5 |
|
chr23_-_1017428 Show fit | 1.24 |
ENSDART00000110588
ENSDART00000183158 |
cadherin 26, tandem duplicate 1 |
|
chr7_-_52963493 Show fit | 1.21 |
ENSDART00000052029
|
cocaine- and amphetamine-regulated transcript 3 |
|
chr18_-_30499489 Show fit | 1.17 |
ENSDART00000033746
|
GINS complex subunit 2 |
|
chr24_+_31361407 Show fit | 1.17 |
ENSDART00000162668
|
cAMP responsive element modulator b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 3.4 | GO:0043576 | respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576) |
0.0 | 2.1 | GO:1902036 | regulation of hematopoietic stem cell differentiation(GO:1902036) |
0.4 | 1.8 | GO:1904036 | negative regulation of epithelial cell apoptotic process(GO:1904036) |
0.1 | 1.5 | GO:0042661 | regulation of mesodermal cell fate specification(GO:0042661) |
0.1 | 1.4 | GO:0036353 | histone H2A-K119 monoubiquitination(GO:0036353) |
0.0 | 1.4 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.2 | 1.2 | GO:0008343 | adult feeding behavior(GO:0008343) |
0.1 | 1.2 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.0 | 1.2 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.0 | 1.0 | GO:0016525 | negative regulation of angiogenesis(GO:0016525) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 1.4 | GO:0035102 | PRC1 complex(GO:0035102) |
0.2 | 1.2 | GO:0000811 | GINS complex(GO:0000811) |
0.1 | 1.1 | GO:1990589 | ATF4-CREB1 transcription factor complex(GO:1990589) |
0.2 | 0.9 | GO:0031511 | Mis6-Sim4 complex(GO:0031511) |
0.0 | 0.7 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 0.5 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 0.5 | GO:0030126 | COPI vesicle coat(GO:0030126) |
0.0 | 0.5 | GO:0005921 | gap junction(GO:0005921) |
0.0 | 0.5 | GO:0043596 | nuclear replication fork(GO:0043596) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.4 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
0.1 | 3.3 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.0 | 2.3 | GO:0045296 | cadherin binding(GO:0045296) |
0.1 | 1.7 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.0 | 1.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 1.5 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 0.8 | GO:0033691 | sialic acid binding(GO:0033691) |
0.0 | 0.8 | GO:0015377 | cation:chloride symporter activity(GO:0015377) potassium:chloride symporter activity(GO:0015379) |
0.2 | 0.7 | GO:0003985 | acetyl-CoA C-acetyltransferase activity(GO:0003985) |
0.0 | 0.7 | GO:0046975 | histone methyltransferase activity (H3-K36 specific)(GO:0046975) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 1.0 | PID FGF PATHWAY | FGF signaling pathway |
0.0 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 0.5 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.3 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.1 | 1.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.9 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 0.6 | REACTOME SIGNALING BY ACTIVATED POINT MUTANTS OF FGFR1 | Genes involved in Signaling by activated point mutants of FGFR1 |
0.0 | 0.6 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.6 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.1 | 0.5 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |
0.0 | 0.3 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.0 | 0.3 | REACTOME ACYL CHAIN REMODELLING OF PC | Genes involved in Acyl chain remodelling of PC |
0.0 | 0.3 | REACTOME ERKS ARE INACTIVATED | Genes involved in ERKs are inactivated |