PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
klf12a | dr11_v1_chr1_+_34527213_34527213 | 0.45 | 5.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_+_42132962 Show fit | 4.00 |
ENSDART00000187739
|
WW domain containing E3 ubiquitin protein ligase 1 |
|
chr3_+_1211242 Show fit | 3.98 |
ENSDART00000171287
ENSDART00000165769 |
polymerase (DNA-directed), delta interacting protein 3 |
|
chr16_-_17197546 Show fit | 3.70 |
ENSDART00000139939
ENSDART00000135146 ENSDART00000063800 ENSDART00000163606 |
glyceraldehyde-3-phosphate dehydrogenase |
|
chr17_+_8925232 Show fit | 3.15 |
ENSDART00000036668
|
proteasome 26S subunit, ATPase 1a |
|
chr13_+_28417297 Show fit | 3.02 |
ENSDART00000043658
|
solute carrier family 2 (facilitated glucose transporter), member 15a |
|
chr4_+_17417111 Show fit | 2.88 |
ENSDART00000056005
|
achaete-scute family bHLH transcription factor 1a |
|
chr25_+_3358701 Show fit | 2.82 |
ENSDART00000104877
|
coiled-coil-helix-coiled-coil-helix domain containing 3b |
|
chr20_+_35058634 Show fit | 2.69 |
ENSDART00000122696
|
heterogeneous nuclear ribonucleoprotein Ub |
|
chr7_-_48665305 Show fit | 2.65 |
ENSDART00000190507
|
cyclin-dependent kinase inhibitor 1Ca |
|
chr17_+_25332711 Show fit | 2.51 |
ENSDART00000082319
|
transmembrane protein 54a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.4 | GO:0045732 | positive regulation of protein catabolic process(GO:0045732) |
0.1 | 3.7 | GO:0050821 | protein stabilization(GO:0050821) |
0.1 | 3.7 | GO:0061386 | closure of optic fissure(GO:0061386) |
0.0 | 3.7 | GO:0006954 | inflammatory response(GO:0006954) |
0.0 | 3.5 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.7 | 2.9 | GO:0061549 | sympathetic ganglion development(GO:0061549) |
0.1 | 2.8 | GO:0007007 | inner mitochondrial membrane organization(GO:0007007) |
0.7 | 2.7 | GO:1904357 | negative regulation of telomere maintenance via telomerase(GO:0032211) negative regulation of telomere maintenance via telomere lengthening(GO:1904357) |
0.2 | 2.7 | GO:0051382 | kinetochore assembly(GO:0051382) |
0.1 | 2.7 | GO:0035435 | phosphate ion transmembrane transport(GO:0035435) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.4 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 4.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 4.0 | GO:0000785 | chromatin(GO:0000785) |
1.0 | 3.9 | GO:1990498 | mitotic spindle microtubule(GO:1990498) |
0.0 | 3.2 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.2 | 3.1 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
0.1 | 2.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.3 | 2.8 | GO:0061617 | MICOS complex(GO:0061617) |
0.1 | 2.7 | GO:0031105 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.0 | 2.7 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.1 | GO:0003924 | GTPase activity(GO:0003924) |
0.0 | 7.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.9 | 3.7 | GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
0.5 | 3.1 | GO:0036402 | proteasome-activating ATPase activity(GO:0036402) |
0.0 | 3.1 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
0.5 | 2.7 | GO:0034046 | poly(G) binding(GO:0034046) |
0.3 | 2.7 | GO:0043515 | kinetochore binding(GO:0043515) |
0.2 | 2.7 | GO:0005315 | inorganic phosphate transmembrane transporter activity(GO:0005315) |
0.0 | 2.7 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
0.3 | 2.6 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.5 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.1 | 5.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.1 | 3.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 1.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 1.4 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.1 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 1.0 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
0.1 | 0.9 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 0.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 0.7 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.2 | REACTOME SIGNALING BY ERBB4 | Genes involved in Signaling by ERBB4 |
0.2 | 3.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 2.7 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.2 | 2.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 2.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 1.7 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 1.6 | REACTOME VIF MEDIATED DEGRADATION OF APOBEC3G | Genes involved in Vif-mediated degradation of APOBEC3G |
0.0 | 1.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 1.3 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.1 | 1.2 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |