PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
klf12b | dr11_v1_chr9_+_30720048_30720048 | 0.42 | 7.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_25187210 Show fit | 5.49 |
ENSDART00000101147
ENSDART00000167528 |
si:dkey-183i3.5 |
|
chr6_+_13742899 Show fit | 4.51 |
ENSDART00000104722
|
cyclin-dependent kinase 5, regulatory subunit 2a (p39) |
|
chr19_-_26863626 Show fit | 3.73 |
ENSDART00000145568
|
proline-rich transmembrane protein 1 |
|
chr15_-_37846047 Show fit | 3.56 |
ENSDART00000184837
|
heat shock cognate 70 |
|
chr5_-_25174420 Show fit | 2.41 |
ENSDART00000141554
|
ATP-binding cassette, sub-family A (ABC1), member 2 |
|
chr22_-_282498 Show fit | 2.36 |
ENSDART00000182766
|
|
|
chr5_-_67471375 Show fit | 2.30 |
ENSDART00000147009
|
si:dkey-251i10.2 |
|
chr13_-_11536951 Show fit | 2.15 |
ENSDART00000018155
|
adenylosuccinate synthase |
|
chr10_-_19497914 Show fit | 2.15 |
ENSDART00000132084
|
si:ch211-127i16.2 |
|
chr11_+_36989696 Show fit | 2.13 |
ENSDART00000045888
|
transketolase a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.4 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.1 | 3.9 | GO:0010842 | retina layer formation(GO:0010842) |
0.0 | 3.9 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.2 | 3.6 | GO:0042026 | protein refolding(GO:0042026) |
0.1 | 2.8 | GO:0007257 | activation of JUN kinase activity(GO:0007257) positive regulation of JUN kinase activity(GO:0043507) |
0.9 | 2.6 | GO:0048682 | axon extension involved in regeneration(GO:0048677) sprouting of injured axon(GO:0048682) |
0.2 | 2.6 | GO:0097104 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 2.5 | GO:0002028 | regulation of sodium ion transport(GO:0002028) |
0.5 | 2.3 | GO:0051659 | maintenance of mitochondrion location(GO:0051659) |
0.4 | 2.1 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.0 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.9 | 4.5 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.0 | 4.5 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 3.8 | GO:0014069 | postsynaptic density(GO:0014069) |
0.0 | 3.6 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 2.5 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.2 | 2.3 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 2.2 | GO:0043256 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 1.8 | GO:0098839 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.2 | 1.7 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | GO:0008201 | heparin binding(GO:0008201) |
0.3 | 4.5 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
0.2 | 3.6 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.1 | 3.5 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.0 | 3.0 | GO:0003774 | motor activity(GO:0003774) |
0.1 | 2.6 | GO:0042043 | neurexin family protein binding(GO:0042043) |
0.1 | 2.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 2.2 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
0.4 | 2.1 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
0.2 | 2.1 | GO:0004705 | JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.6 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 2.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.5 | PID NOTCH PATHWAY | Notch signaling pathway |
0.1 | 2.0 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 1.6 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 1.6 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.5 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 1.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.4 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.1 | 1.2 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.2 | 2.8 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.2 | 2.2 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 1.6 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.5 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 1.5 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.2 | 1.4 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 1.4 | REACTOME HIGHLY CALCIUM PERMEABLE POSTSYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Highly calcium permeable postsynaptic nicotinic acetylcholine receptors |
0.1 | 1.4 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.0 | 1.4 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |