PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lef1 | dr11_v1_chr1_+_49814942_49814942 | -0.49 | 3.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_45705525 Show fit | 8.54 |
ENSDART00000148959
|
endothelin receptor type Ab |
|
chr15_-_3736149 Show fit | 6.41 |
ENSDART00000182986
|
lysophosphatidic acid receptor 6a |
|
chr16_-_45910050 Show fit | 6.23 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr12_+_6465557 Show fit | 6.23 |
ENSDART00000066477
ENSDART00000122271 |
dickkopf WNT signaling pathway inhibitor 1b |
|
chr20_-_29498178 Show fit | 5.93 |
ENSDART00000152986
ENSDART00000027851 ENSDART00000152954 |
ribonucleotide reductase M2 polypeptide |
|
chr6_-_45905746 Show fit | 5.21 |
ENSDART00000025428
|
eph receptor A2 a |
|
chr19_-_17208728 Show fit | 4.73 |
ENSDART00000151228
|
stathmin 1a |
|
chr18_-_23875370 Show fit | 4.62 |
ENSDART00000130163
|
nuclear receptor subfamily 2, group F, member 2 |
|
chr6_-_43092175 Show fit | 4.50 |
ENSDART00000084389
|
leucine rich repeat neuronal 1 |
|
chr17_+_15535501 Show fit | 4.20 |
ENSDART00000002932
|
myristoylated alanine-rich protein kinase C substrate b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 14.0 | GO:0060030 | dorsal convergence(GO:0060030) |
1.0 | 11.3 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
1.2 | 11.2 | GO:0043697 | dedifferentiation(GO:0043696) cell dedifferentiation(GO:0043697) |
0.3 | 11.1 | GO:0035025 | positive regulation of Rho protein signal transduction(GO:0035025) |
0.0 | 9.7 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
1.2 | 8.5 | GO:0003319 | cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) |
0.0 | 8.4 | GO:0045892 | negative regulation of transcription, DNA-templated(GO:0045892) |
2.7 | 8.0 | GO:0060838 | lymphatic endothelial cell fate commitment(GO:0060838) venous endothelial cell differentiation(GO:0060843) venous endothelial cell fate commitment(GO:0060845) |
2.5 | 7.4 | GO:1904251 | regulation of bile acid biosynthetic process(GO:0070857) regulation of bile acid metabolic process(GO:1904251) |
0.0 | 7.0 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 112.1 | GO:0005634 | nucleus(GO:0005634) |
0.0 | 11.4 | GO:0000785 | chromatin(GO:0000785) |
0.4 | 10.2 | GO:0035102 | PRC1 complex(GO:0035102) |
0.3 | 9.6 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 9.1 | GO:0005829 | cytosol(GO:0005829) |
0.0 | 8.2 | GO:0005768 | endosome(GO:0005768) |
0.1 | 7.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 4.9 | GO:0000922 | spindle pole(GO:0000922) |
0.1 | 4.6 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.1 | 4.3 | GO:0032432 | actin filament bundle(GO:0032432) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 68.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 15.4 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 15.2 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 14.9 | GO:0042393 | histone binding(GO:0042393) |
1.6 | 11.3 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.7 | 9.6 | GO:0070915 | lysophosphatidic acid receptor activity(GO:0070915) |
1.2 | 9.5 | GO:0001972 | retinoic acid binding(GO:0001972) |
1.2 | 8.5 | GO:0004962 | endothelin receptor activity(GO:0004962) |
0.1 | 7.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 7.8 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 15.4 | PID E2F PATHWAY | E2F transcription factor network |
0.2 | 13.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.6 | 11.0 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.3 | 4.3 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.2 | 3.8 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.2 | 3.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.2 | 2.8 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.2 | 2.6 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.1 | 2.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 2.5 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 12.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 10.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.8 | 7.5 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.2 | 6.5 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.1 | 5.5 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.2 | 5.2 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 5.0 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
0.1 | 4.8 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
0.2 | 4.0 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
1.0 | 3.0 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |