PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lhx9 | dr11_v1_chr22_-_23253481_23253481 | -0.55 | 1.5e-02 | Click! |
lhx2b | dr11_v1_chr8_+_3085120_3085219 | -0.23 | 3.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_45910050 Show fit | 3.74 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr25_-_21031007 Show fit | 3.01 |
ENSDART00000138985
|
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide a |
|
chr17_-_16422654 Show fit | 2.74 |
ENSDART00000150149
|
tyrosyl-DNA phosphodiesterase 1 |
|
chr16_+_54209504 Show fit | 2.50 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr20_+_98179 Show fit | 2.34 |
ENSDART00000022725
|
si:ch1073-155h21.1 |
|
chr22_-_36530902 Show fit | 2.10 |
ENSDART00000056188
|
info polymerase (RNA) II (DNA directed) polypeptide H |
|
chr13_+_7442023 Show fit | 2.10 |
ENSDART00000080975
|
tumor necrosis factor, alpha-induced protein 2b |
|
chr25_+_22320738 Show fit | 2.03 |
ENSDART00000073566
|
cytochrome P450, family 11, subfamily A, polypeptide 1 |
|
chr12_-_35830625 Show fit | 2.03 |
ENSDART00000180028
|
|
|
chr24_-_37955993 Show fit | 1.99 |
ENSDART00000041805
|
meteorin, glial cell differentiation regulator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 5.2 | GO:0000012 | single strand break repair(GO:0000012) |
0.0 | 4.0 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.1 | 3.7 | GO:0060030 | dorsal convergence(GO:0060030) |
0.2 | 2.2 | GO:0036353 | histone H2A-K119 monoubiquitination(GO:0036353) |
0.0 | 2.2 | GO:0007229 | integrin-mediated signaling pathway(GO:0007229) |
0.2 | 2.1 | GO:0051601 | exocyst localization(GO:0051601) |
0.1 | 2.1 | GO:0031297 | replication fork processing(GO:0031297) |
0.0 | 2.1 | GO:0018345 | protein palmitoylation(GO:0018345) |
0.4 | 2.0 | GO:0006700 | C21-steroid hormone biosynthetic process(GO:0006700) |
0.0 | 2.0 | GO:0050772 | positive regulation of axonogenesis(GO:0050772) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 2.9 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.1 | 2.2 | GO:0035102 | PRC1 complex(GO:0035102) |
0.3 | 2.1 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.2 | 2.1 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.1 | 1.8 | GO:0043186 | P granule(GO:0043186) |
0.0 | 1.8 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.6 | 1.7 | GO:0034457 | Mpp10 complex(GO:0034457) |
0.2 | 1.7 | GO:0070552 | BRISC complex(GO:0070552) |
0.1 | 1.7 | GO:0031010 | ISWI-type complex(GO:0031010) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.0 | GO:0031821 | G-protein coupled serotonin receptor binding(GO:0031821) |
0.9 | 2.7 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.1 | 2.5 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.0 | 2.4 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 2.2 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.0 | 2.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.0 | 2.1 | GO:0016409 | palmitoyltransferase activity(GO:0016409) |
0.0 | 2.1 | GO:0005179 | hormone activity(GO:0005179) |
0.7 | 2.0 | GO:0016713 | cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
0.5 | 1.9 | GO:0015126 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.1 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.0 | 1.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.7 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 1.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 1.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.4 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 1.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 1.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.9 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.2 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.1 | 2.7 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.2 | 2.5 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.2 | 2.0 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.0 | 1.8 | REACTOME DESTABILIZATION OF MRNA BY AUF1 HNRNP D0 | Genes involved in Destabilization of mRNA by AUF1 (hnRNP D0) |
0.0 | 1.7 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.0 | 1.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.0 | 1.6 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.5 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.1 | 1.3 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |