PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
LHX3 | dr11_v1_chr5_+_71802014_71802014 | 0.78 | 9.1e-05 | Click! |
lhx4 | dr11_v1_chr8_-_14484599_14484599 | 0.40 | 8.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_34641237 Show fit | 5.90 |
ENSDART00000133996
|
short stature homeobox |
|
chr9_-_22099536 Show fit | 4.87 |
ENSDART00000101923
|
|
|
chr25_+_31276842 Show fit | 3.77 |
ENSDART00000187238
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr25_+_31227747 Show fit | 3.61 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr9_+_2574122 Show fit | 2.60 |
ENSDART00000166326
ENSDART00000191822 |
si:ch73-167c12.2 |
|
chr14_+_46313396 Show fit | 2.55 |
ENSDART00000047525
|
crystallin, beta A1, like 1 |
|
chr11_+_24002503 Show fit | 2.46 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr11_+_24001993 Show fit | 2.32 |
ENSDART00000168215
|
chitinase, acidic.2 |
|
chr21_-_20939488 Show fit | 2.32 |
ENSDART00000039043
|
regulator of G protein signaling 7 binding protein b |
|
chr20_+_4060839 Show fit | 2.29 |
ENSDART00000178565
|
tripartite motif containing 67 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.9 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 5.8 | GO:0030282 | bone mineralization(GO:0030282) |
0.4 | 4.8 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.0 | 3.9 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.1 | 3.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
0.9 | 2.7 | GO:1900620 | acetylcholine biosynthetic process(GO:0008292) acetate ester biosynthetic process(GO:1900620) |
0.1 | 2.7 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.1 | 2.2 | GO:0042026 | protein refolding(GO:0042026) |
0.0 | 2.1 | GO:0006414 | translational elongation(GO:0006414) |
0.3 | 2.0 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.4 | GO:0043005 | neuron projection(GO:0043005) |
0.2 | 7.4 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 3.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 2.1 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 1.8 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.1 | 1.3 | GO:0031045 | dense core granule(GO:0031045) |
0.4 | 1.2 | GO:0060077 | inhibitory synapse(GO:0060077) |
0.1 | 1.1 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 1.1 | GO:0030057 | desmosome(GO:0030057) |
0.0 | 1.1 | GO:0005884 | actin filament(GO:0005884) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.8 | GO:0004568 | chitinase activity(GO:0004568) |
0.1 | 3.1 | GO:0043022 | ribosome binding(GO:0043022) |
0.2 | 2.7 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
0.1 | 2.4 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 2.4 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 2.4 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 2.2 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.7 | 2.0 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.0 | 2.0 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 1.9 | GO:0005247 | voltage-gated chloride channel activity(GO:0005247) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.2 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.1 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.1 | 1.0 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.8 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.7 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.1 | 0.6 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.6 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.6 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.4 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 1.4 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.1 | 1.1 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 1.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.1 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.0 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.0 | 1.0 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.9 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.1 | 0.8 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.0 | 0.8 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |