PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lhx5 | dr11_v1_chr21_-_15929041_15929041 | -0.39 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22099536 Show fit | 2.55 |
ENSDART00000101923
|
|
|
chr6_+_7444899 Show fit | 2.46 |
ENSDART00000053775
|
ADP-ribosylation factor 3b |
|
chr17_-_37395460 Show fit | 2.28 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr3_-_11624694 Show fit | 2.12 |
ENSDART00000127157
|
hepatic leukemia factor a |
|
chr25_+_31227747 Show fit | 1.87 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr5_+_2815021 Show fit | 1.86 |
ENSDART00000020472
|
4-hydroxyphenylpyruvate dioxygenase a |
|
chr16_-_28658341 Show fit | 1.84 |
ENSDART00000148456
|
ATP-binding cassette, sub-family B (MDR/TAP), member 4 |
|
chr3_-_59297532 Show fit | 1.75 |
ENSDART00000187991
|
|
|
chr19_-_26869103 Show fit | 1.69 |
ENSDART00000089699
|
proline-rich transmembrane protein 1 |
|
chr15_-_37850969 Show fit | 1.64 |
ENSDART00000031418
|
heat shock cognate 70 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
0.8 | 2.3 | GO:0071236 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.1 | 2.0 | GO:0009636 | response to toxic substance(GO:0009636) |
0.0 | 2.0 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.3 | 1.9 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.1 | 1.8 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.4 | 1.6 | GO:0099563 | modification of synaptic structure(GO:0099563) |
0.1 | 1.6 | GO:0042026 | protein refolding(GO:0042026) |
0.0 | 1.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 1.4 | GO:0038203 | TORC2 signaling(GO:0038203) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 2.4 | GO:0030424 | axon(GO:0030424) |
0.0 | 2.2 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 1.9 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.6 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.1 | 1.4 | GO:0031932 | TORC2 complex(GO:0031932) |
0.0 | 1.3 | GO:0016592 | mediator complex(GO:0016592) |
0.1 | 1.1 | GO:0030057 | desmosome(GO:0030057) |
0.1 | 1.1 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
0.0 | 1.1 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0042277 | peptide binding(GO:0042277) |
0.6 | 1.9 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.6 | 1.8 | GO:0015562 | protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562) |
0.1 | 1.8 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 1.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 1.8 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.1 | 1.6 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.1 | 1.4 | GO:0017110 | nucleoside-diphosphatase activity(GO:0017110) |
0.0 | 1.4 | GO:0043539 | protein serine/threonine kinase activator activity(GO:0043539) |
0.0 | 1.4 | GO:0004896 | cytokine receptor activity(GO:0004896) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 1.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.0 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.6 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.1 | 1.1 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.1 | 1.0 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.7 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.4 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.4 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.0 | 0.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.3 | REACTOME SOS MEDIATED SIGNALLING | Genes involved in SOS-mediated signalling |