PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lhx6 | dr11_v1_chr10_+_9372702_9372702 | 0.54 | 1.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22099536 Show fit | 1.20 |
ENSDART00000101923
|
|
|
chr3_-_31079186 Show fit | 1.17 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr10_-_11385155 Show fit | 1.09 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr3_-_50443607 Show fit | 0.85 |
ENSDART00000074036
|
recoverin a |
|
chr8_-_23780334 Show fit | 0.79 |
ENSDART00000145179
ENSDART00000145894 |
zgc:195245 |
|
chr17_-_37395460 Show fit | 0.74 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr5_-_50992690 Show fit | 0.68 |
ENSDART00000149553
ENSDART00000097460 ENSDART00000192021 |
3-hydroxy-3-methylglutaryl-CoA reductase a |
|
chr22_+_7738966 Show fit | 0.64 |
ENSDART00000147073
|
si:ch73-44m9.5 |
|
chr1_-_50859053 Show fit | 0.62 |
ENSDART00000132779
ENSDART00000137648 |
si:dkeyp-123h10.2 |
|
chr16_-_11798994 Show fit | 0.61 |
ENSDART00000135408
|
cornifelin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.1 | 0.9 | GO:0061075 | positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868) |
0.1 | 0.8 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 0.8 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 0.7 | GO:0097237 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.0 | 0.7 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.0 | 0.6 | GO:0006884 | cell volume homeostasis(GO:0006884) |
0.0 | 0.5 | GO:2000311 | regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000311) |
0.1 | 0.4 | GO:0019242 | methylglyoxal biosynthetic process(GO:0019242) glyceraldehyde-3-phosphate biosynthetic process(GO:0046166) |
0.1 | 0.4 | GO:0099548 | trans-synaptic signaling by soluble gas(GO:0099543) trans-synaptic signaling by nitric oxide(GO:0099548) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 0.8 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 0.7 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.1 | 0.5 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.0 | 0.4 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 0.4 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 0.3 | GO:0005955 | calcineurin complex(GO:0005955) |
0.0 | 0.3 | GO:0035517 | PR-DUB complex(GO:0035517) |
0.0 | 0.3 | GO:0043083 | synaptic cleft(GO:0043083) |
0.0 | 0.3 | GO:0030667 | secretory granule membrane(GO:0030667) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.0 | GO:0005504 | fatty acid binding(GO:0005504) |
0.1 | 0.6 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.0 | 0.6 | GO:0015377 | cation:chloride symporter activity(GO:0015377) potassium:chloride symporter activity(GO:0015379) |
0.0 | 0.5 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.1 | 0.4 | GO:0008929 | triose-phosphate isomerase activity(GO:0004807) methylglyoxal synthase activity(GO:0008929) |
0.1 | 0.4 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.0 | 0.4 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.0 | 0.4 | GO:0004383 | guanylate cyclase activity(GO:0004383) |
0.0 | 0.4 | GO:0050321 | tau-protein kinase activity(GO:0050321) |
0.0 | 0.4 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.3 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 0.4 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.4 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 0.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.3 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.0 | 0.2 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.0 | 0.2 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |