PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lhx8b | dr11_v1_chr8_-_17926814_17926814 | -0.74 | 2.9e-04 | Click! |
lhx8a | dr11_v1_chr2_+_11205795_11205795 | 0.62 | 4.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22318511 Show fit | 3.63 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr12_-_4756478 Show fit | 3.09 |
ENSDART00000152181
|
microtubule-associated protein tau a |
|
chr7_+_26326462 Show fit | 3.08 |
ENSDART00000173515
|
zonadhesin, like |
|
chr18_+_924949 Show fit | 3.02 |
ENSDART00000170888
ENSDART00000193163 |
pyruvate kinase M1/2a |
|
chr9_-_22310919 Show fit | 2.68 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr18_-_8877077 Show fit | 2.65 |
ENSDART00000137266
|
si:dkey-95h12.2 |
|
chr2_-_293036 Show fit | 2.54 |
ENSDART00000171629
|
si:ch73-40a17.3 |
|
chr17_-_6730247 Show fit | 2.38 |
ENSDART00000031091
|
visinin-like 1b |
|
chr6_+_40661703 Show fit | 2.30 |
ENSDART00000142492
|
enolase 1b, (alpha) |
|
chr4_+_5531583 Show fit | 2.27 |
ENSDART00000137500
ENSDART00000042080 |
si:dkey-14d8.6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.4 | 3.9 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.4 | 3.5 | GO:0044805 | late nucleophagy(GO:0044805) |
0.1 | 3.0 | GO:0006096 | glycolytic process(GO:0006096) |
0.0 | 3.0 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.5 | 2.7 | GO:0048245 | eosinophil chemotaxis(GO:0048245) eosinophil migration(GO:0072677) |
0.3 | 2.3 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.1 | 2.3 | GO:0006471 | protein ADP-ribosylation(GO:0006471) |
0.1 | 2.3 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.2 | 2.2 | GO:0071300 | cellular response to retinoic acid(GO:0071300) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.3 | 2.7 | GO:0001772 | immunological synapse(GO:0001772) |
0.3 | 2.3 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 2.1 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 1.9 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 1.8 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 1.7 | GO:0048179 | activin receptor complex(GO:0048179) |
0.0 | 1.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.2 | 1.6 | GO:0042583 | chromaffin granule(GO:0042583) |
0.0 | 1.6 | GO:0005861 | troponin complex(GO:0005861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.5 | 3.0 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 2.9 | GO:0061135 | endopeptidase inhibitor activity(GO:0004866) endopeptidase regulator activity(GO:0061135) |
0.5 | 2.7 | GO:0019865 | IgE binding(GO:0019863) immunoglobulin binding(GO:0019865) |
0.3 | 2.3 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.0 | 2.3 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.1 | 1.9 | GO:0042577 | lipid phosphatase activity(GO:0042577) |
0.2 | 1.8 | GO:0004359 | glutaminase activity(GO:0004359) |
0.0 | 1.8 | GO:0045296 | cadherin binding(GO:0045296) |
0.3 | 1.7 | GO:0050254 | rhodopsin kinase activity(GO:0050254) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 1.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 1.2 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 1.0 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.9 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 0.8 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.0 | 0.6 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.0 | 0.5 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.3 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.3 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 2.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 1.9 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 1.4 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.1 | 1.2 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.1 | 0.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 0.9 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.1 | 0.8 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 0.7 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |