PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lmx1a | dr11_v1_chr20_+_33924235_33924236 | -0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_16422654 Show fit | 0.74 |
ENSDART00000150149
|
tyrosyl-DNA phosphodiesterase 1 |
|
chr3_-_26787430 Show fit | 0.54 |
ENSDART00000087047
|
RAB40c, member RAS oncogene family |
|
chr15_+_47440477 Show fit | 0.48 |
ENSDART00000002384
|
paired-like homeobox 2a |
|
chr13_+_11440389 Show fit | 0.47 |
ENSDART00000186463
|
zinc finger and BTB domain containing 18 |
|
chr15_+_9861973 Show fit | 0.42 |
ENSDART00000170945
|
si:dkey-13m3.2 |
|
chr6_-_12912606 Show fit | 0.41 |
ENSDART00000164640
|
islet cell autoantigen 1-like |
|
chr22_-_14247276 Show fit | 0.41 |
ENSDART00000033332
|
si:ch211-246m6.5 |
|
chr2_-_30668580 Show fit | 0.40 |
ENSDART00000087270
|
catenin (cadherin-associated protein), delta 2b |
|
chr17_+_20589553 Show fit | 0.38 |
ENSDART00000154447
|
si:ch73-288o11.4 |
|
chr24_-_38657683 Show fit | 0.37 |
ENSDART00000154843
|
si:ch1073-164k15.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.7 | GO:0000012 | single strand break repair(GO:0000012) |
0.0 | 0.5 | GO:0021703 | locus ceruleus development(GO:0021703) |
0.0 | 0.5 | GO:0036353 | histone H2A-K119 monoubiquitination(GO:0036353) |
0.1 | 0.4 | GO:0034969 | histone arginine methylation(GO:0034969) |
0.0 | 0.4 | GO:0021631 | optic nerve morphogenesis(GO:0021631) |
0.1 | 0.3 | GO:1900745 | positive regulation of p38MAPK cascade(GO:1900745) |
0.0 | 0.3 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
0.0 | 0.3 | GO:0035677 | posterior lateral line neuromast hair cell development(GO:0035677) |
0.0 | 0.3 | GO:0006048 | UDP-N-acetylglucosamine biosynthetic process(GO:0006048) |
0.0 | 0.3 | GO:0060285 | cilium or flagellum-dependent cell motility(GO:0001539) cilium-dependent cell motility(GO:0060285) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | GO:0035102 | PRC1 complex(GO:0035102) |
0.0 | 0.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
0.0 | 0.3 | GO:0090665 | dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665) |
0.0 | 0.3 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 0.2 | GO:0000506 | glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506) |
0.0 | 0.2 | GO:0071818 | BAT3 complex(GO:0071818) |
0.0 | 0.2 | GO:0002102 | podosome(GO:0002102) |
0.0 | 0.2 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 0.1 | GO:0070319 | Golgi to plasma membrane transport vesicle(GO:0070319) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.0 | 0.5 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.1 | 0.4 | GO:0035243 | protein-arginine omega-N symmetric methyltransferase activity(GO:0035243) |
0.0 | 0.3 | GO:0004839 | ubiquitin activating enzyme activity(GO:0004839) |
0.0 | 0.3 | GO:0016868 | intramolecular transferase activity, phosphotransferases(GO:0016868) |
0.0 | 0.3 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.1 | 0.2 | GO:0048487 | beta-tubulin binding(GO:0048487) |
0.0 | 0.2 | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176) |
0.0 | 0.2 | GO:0016176 | superoxide-generating NADPH oxidase activity(GO:0016175) superoxide-generating NADPH oxidase activator activity(GO:0016176) |
0.0 | 0.2 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 0.3 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.2 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |
0.0 | 0.2 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 0.2 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |