PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
lmx1a
|
ENSDARG00000020354 | LIM homeobox transcription factor 1, alpha |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lmx1a | dr11_v1_chr20_+_33924235_33924236 | -0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_16422654 | 0.74 |
ENSDART00000150149
|
tdp1
|
tyrosyl-DNA phosphodiesterase 1 |
chr3_-_26787430 | 0.54 |
ENSDART00000087047
|
rab40c
|
RAB40c, member RAS oncogene family |
chr15_+_47440477 | 0.48 |
ENSDART00000002384
|
phox2a
|
paired-like homeobox 2a |
chr13_+_11440389 | 0.47 |
ENSDART00000186463
|
zbtb18
|
zinc finger and BTB domain containing 18 |
chr15_+_9861973 | 0.42 |
ENSDART00000170945
|
si:dkey-13m3.2
|
si:dkey-13m3.2 |
chr6_-_12912606 | 0.41 |
ENSDART00000164640
|
ical1
|
islet cell autoantigen 1-like |
chr22_-_14247276 | 0.41 |
ENSDART00000033332
|
si:ch211-246m6.5
|
si:ch211-246m6.5 |
chr2_-_30668580 | 0.40 |
ENSDART00000087270
|
ctnnd2b
|
catenin (cadherin-associated protein), delta 2b |
chr17_+_20589553 | 0.38 |
ENSDART00000154447
|
si:ch73-288o11.4
|
si:ch73-288o11.4 |
chr24_-_38657683 | 0.37 |
ENSDART00000154843
|
si:ch1073-164k15.3
|
si:ch1073-164k15.3 |
chr2_+_36701322 | 0.37 |
ENSDART00000002510
|
golim4b
|
golgi integral membrane protein 4b |
chr2_-_38363017 | 0.37 |
ENSDART00000088026
|
prmt5
|
protein arginine methyltransferase 5 |
chr12_+_25600685 | 0.37 |
ENSDART00000077157
|
six3b
|
SIX homeobox 3b |
chr5_-_31901468 | 0.35 |
ENSDART00000147814
ENSDART00000141446 |
coro1cb
|
coronin, actin binding protein, 1Cb |
chr4_-_5795309 | 0.33 |
ENSDART00000039987
|
pgm3
|
phosphoglucomutase 3 |
chr24_+_24461558 | 0.33 |
ENSDART00000182424
|
bhlhe22
|
basic helix-loop-helix family, member e22 |
chr5_+_60590796 | 0.32 |
ENSDART00000159859
|
tmem132e
|
transmembrane protein 132E |
chr5_-_30715225 | 0.31 |
ENSDART00000016758
|
ftr82
|
finTRIM family, member 82 |
chr24_+_24461341 | 0.31 |
ENSDART00000147658
|
bhlhe22
|
basic helix-loop-helix family, member e22 |
chr9_-_27398369 | 0.29 |
ENSDART00000186499
|
tex30
|
testis expressed 30 |
chr7_-_61279523 | 0.29 |
ENSDART00000098610
|
rell1
|
RELT like 1 |
chr23_+_20640484 | 0.29 |
ENSDART00000054691
|
uba1
|
ubiquitin-like modifier activating enzyme 1 |
chr2_+_38373272 | 0.28 |
ENSDART00000113111
|
psmb5
|
proteasome subunit beta 5 |
chr20_-_45812144 | 0.28 |
ENSDART00000147897
ENSDART00000147637 |
fermt1
|
fermitin family member 1 |
chr7_-_38658411 | 0.28 |
ENSDART00000109463
ENSDART00000017155 |
npsn
|
nephrosin |
chr18_+_46382484 | 0.28 |
ENSDART00000024202
ENSDART00000142790 |
daw1
|
dynein assembly factor with WDR repeat domains 1 |
chr1_-_669717 | 0.28 |
ENSDART00000160564
|
cyyr1
|
cysteine/tyrosine-rich 1 |
chr20_-_9095105 | 0.28 |
ENSDART00000140792
|
oma1
|
OMA1 zinc metallopeptidase |
chr7_+_53879191 | 0.28 |
ENSDART00000164768
|
neo1a
|
neogenin 1a |
chr24_+_17260001 | 0.27 |
ENSDART00000066765
|
bmi1a
|
bmi1 polycomb ring finger oncogene 1a |
chr1_+_6172786 | 0.27 |
ENSDART00000126468
|
prkag3a
|
protein kinase, AMP-activated, gamma 3a non-catalytic subunit |
chr12_-_35830625 | 0.25 |
ENSDART00000180028
|
CU459056.1
|
|
chr25_+_34915576 | 0.25 |
ENSDART00000073441
|
sntb2
|
syntrophin, beta 2 |
chr4_+_57881965 | 0.25 |
ENSDART00000162234
|
si:dkeyp-44b5.4
|
si:dkeyp-44b5.4 |
chr1_-_51038885 | 0.25 |
ENSDART00000035150
|
spast
|
spastin |
chr6_-_40029423 | 0.25 |
ENSDART00000103230
|
pfkfb4b
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b |
chr9_+_37152564 | 0.24 |
ENSDART00000189497
|
gli2a
|
GLI family zinc finger 2a |
chr24_+_17260329 | 0.23 |
ENSDART00000129554
|
bmi1a
|
bmi1 polycomb ring finger oncogene 1a |
chr17_+_30369396 | 0.22 |
ENSDART00000076611
|
greb1
|
growth regulation by estrogen in breast cancer 1 |
chr21_+_42717424 | 0.21 |
ENSDART00000166936
ENSDART00000172135 |
sh3pxd2b
|
SH3 and PX domains 2B |
chr16_-_16152199 | 0.21 |
ENSDART00000012718
|
fabp11b
|
fatty acid binding protein 11b |
chr4_+_77943184 | 0.21 |
ENSDART00000159094
|
pacsin2
|
protein kinase C and casein kinase substrate in neurons 2 |
chr8_-_14484599 | 0.20 |
ENSDART00000057644
|
lhx4
|
LIM homeobox 4 |
chr7_+_21272833 | 0.20 |
ENSDART00000052942
|
serpinh2
|
serine (or cysteine) peptidase inhibitor, clade H, member 2 |
chr3_-_26806032 | 0.20 |
ENSDART00000143710
|
pigq
|
phosphatidylinositol glycan anchor biosynthesis, class Q |
chr21_+_25802190 | 0.19 |
ENSDART00000128987
|
nf2b
|
neurofibromin 2b (merlin) |
chr2_-_16217344 | 0.18 |
ENSDART00000152031
|
arhgef4
|
Rho guanine nucleotide exchange factor (GEF) 4 |
chr14_+_44794936 | 0.18 |
ENSDART00000128881
|
zgc:195212
|
zgc:195212 |
chr1_+_35985813 | 0.17 |
ENSDART00000179634
ENSDART00000139636 ENSDART00000175902 |
zgc:152968
|
zgc:152968 |
chr3_+_14259115 | 0.17 |
ENSDART00000154470
|
si:ch211-108d22.1
|
si:ch211-108d22.1 |
chr22_-_24285432 | 0.17 |
ENSDART00000164083
|
si:ch211-117l17.4
|
si:ch211-117l17.4 |
chr23_-_18567088 | 0.17 |
ENSDART00000192371
|
sephs2
|
selenophosphate synthetase 2 |
chr18_+_8320165 | 0.17 |
ENSDART00000092053
|
chkb
|
choline kinase beta |
chr8_+_50953776 | 0.16 |
ENSDART00000013870
|
zgc:56596
|
zgc:56596 |
chr2_+_2223837 | 0.16 |
ENSDART00000101038
ENSDART00000129354 |
tmie
|
transmembrane inner ear |
chr15_+_32798333 | 0.16 |
ENSDART00000162370
ENSDART00000166525 |
spartb
|
spartin b |
chr24_+_21540842 | 0.16 |
ENSDART00000091529
|
wasf3b
|
WAS protein family, member 3b |
chr16_-_46567344 | 0.15 |
ENSDART00000127721
|
si:dkey-152b24.7
|
si:dkey-152b24.7 |
chr20_+_6035427 | 0.15 |
ENSDART00000054086
|
tshr
|
thyroid stimulating hormone receptor |
chr10_-_5844915 | 0.15 |
ENSDART00000185929
|
ankrd55
|
ankyrin repeat domain 55 |
chr17_+_22577472 | 0.14 |
ENSDART00000045099
|
yipf4
|
Yip1 domain family, member 4 |
chr7_+_7696665 | 0.13 |
ENSDART00000091099
|
ino80b
|
INO80 complex subunit B |
chr8_+_43340995 | 0.13 |
ENSDART00000038566
|
rflna
|
refilin A |
chr9_-_38398789 | 0.13 |
ENSDART00000188384
|
znf142
|
zinc finger protein 142 |
chr15_-_43284021 | 0.12 |
ENSDART00000041677
|
serpine2
|
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 |
chr4_+_25692277 | 0.12 |
ENSDART00000047113
|
acot18
|
acyl-CoA thioesterase 18 |
chr4_+_72723304 | 0.12 |
ENSDART00000186791
ENSDART00000158902 ENSDART00000191925 |
rab3ip
|
RAB3A interacting protein (rabin3) |
chr21_-_25801956 | 0.11 |
ENSDART00000101219
|
mettl27
|
methyltransferase like 27 |
chr18_-_17485419 | 0.11 |
ENSDART00000018764
|
foxl1
|
forkhead box L1 |
chr24_-_40860603 | 0.10 |
ENSDART00000188032
|
CU633479.7
|
|
chr4_+_45484774 | 0.10 |
ENSDART00000150573
|
si:dkey-256i11.6
|
si:dkey-256i11.6 |
chr23_-_16485190 | 0.09 |
ENSDART00000155038
|
si:dkeyp-100a5.4
|
si:dkeyp-100a5.4 |
chr4_-_64336270 | 0.09 |
ENSDART00000131672
|
znf1147
|
zinc finger protein 1147 |
chr25_+_34915762 | 0.08 |
ENSDART00000191776
|
sntb2
|
syntrophin, beta 2 |
chr8_+_26007308 | 0.08 |
ENSDART00000191423
|
xpc
|
xeroderma pigmentosum, complementation group C |
chr10_-_11261386 | 0.07 |
ENSDART00000189946
|
ptbp3
|
polypyrimidine tract binding protein 3 |
chr22_-_17653143 | 0.07 |
ENSDART00000089171
|
hmha1b
|
histocompatibility (minor) HA-1 b |
chr19_-_14970813 | 0.06 |
ENSDART00000184312
|
CR394532.2
|
|
chr16_+_23303859 | 0.06 |
ENSDART00000006093
|
slc50a1
|
solute carrier family 50 (sugar efflux transporter), member 1 |
chr22_-_17652914 | 0.06 |
ENSDART00000138483
|
si:ch73-243b8.4
|
si:ch73-243b8.4 |
chr25_-_16157776 | 0.05 |
ENSDART00000138453
|
si:dkey-80c24.5
|
si:dkey-80c24.5 |
chr25_+_16189044 | 0.05 |
ENSDART00000143975
|
si:dkey-80c24.1
|
si:dkey-80c24.1 |
chr22_-_19552796 | 0.05 |
ENSDART00000148088
ENSDART00000105485 |
si:dkey-78l4.14
|
si:dkey-78l4.14 |
chr8_-_53044300 | 0.05 |
ENSDART00000191653
|
nr6a1a
|
nuclear receptor subfamily 6, group A, member 1a |
chr16_-_28856112 | 0.05 |
ENSDART00000078543
|
syt11b
|
synaptotagmin XIb |
chr7_-_58729894 | 0.05 |
ENSDART00000149347
|
chchd7
|
coiled-coil-helix-coiled-coil-helix domain containing 7 |
chr5_+_33498253 | 0.05 |
ENSDART00000140993
|
ms4a17c.2
|
membrane-spanning 4-domains, subfamily A, member 17c.2 |
chr7_+_7048245 | 0.03 |
ENSDART00000001649
|
actn3b
|
actinin alpha 3b |
chr6_+_9130989 | 0.03 |
ENSDART00000162588
|
rgn
|
regucalcin |
chr17_-_45040813 | 0.03 |
ENSDART00000075514
|
entpd5a
|
ectonucleoside triphosphate diphosphohydrolase 5a |
chr5_-_23843636 | 0.03 |
ENSDART00000193280
|
GBGT1 (1 of many)
|
si:ch211-135f11.5 |
chr19_+_14573998 | 0.00 |
ENSDART00000022076
|
fam46bb
|
family with sequence similarity 46, member Bb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.7 | GO:0000012 | single strand break repair(GO:0000012) |
0.1 | 0.3 | GO:1900745 | positive regulation of p38MAPK cascade(GO:1900745) |
0.1 | 0.4 | GO:0034969 | histone arginine methylation(GO:0034969) |
0.1 | 0.2 | GO:0034214 | protein hexamerization(GO:0034214) mitotic spindle disassembly(GO:0051228) spindle disassembly(GO:0051230) |
0.1 | 0.2 | GO:0048618 | post-embryonic foregut morphogenesis(GO:0048618) |
0.0 | 0.4 | GO:0021631 | optic nerve morphogenesis(GO:0021631) |
0.0 | 0.5 | GO:0021703 | locus ceruleus development(GO:0021703) |
0.0 | 0.1 | GO:0032331 | negative regulation of chondrocyte differentiation(GO:0032331) negative regulation of cartilage development(GO:0061037) negative regulation of chondrocyte development(GO:0061182) regulation of bone mineralization involved in bone maturation(GO:1900157) negative regulation of bone mineralization involved in bone maturation(GO:1900158) negative regulation of bone development(GO:1903011) |
0.0 | 0.5 | GO:0036353 | histone H2A-K119 monoubiquitination(GO:0036353) |
0.0 | 0.3 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
0.0 | 0.2 | GO:0071800 | podosome assembly(GO:0071800) |
0.0 | 0.3 | GO:0035677 | posterior lateral line neuromast hair cell development(GO:0035677) |
0.0 | 0.3 | GO:0006048 | UDP-N-acetylglucosamine biosynthetic process(GO:0006048) |
0.0 | 0.2 | GO:0042138 | meiotic DNA double-strand break formation(GO:0042138) |
0.0 | 0.2 | GO:0070836 | membrane raft assembly(GO:0001765) plasma membrane raft assembly(GO:0044854) plasma membrane raft organization(GO:0044857) caveola assembly(GO:0070836) |
0.0 | 0.2 | GO:0021521 | ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573) |
0.0 | 0.2 | GO:0071816 | tail-anchored membrane protein insertion into ER membrane(GO:0071816) |
0.0 | 0.2 | GO:0006003 | fructose 2,6-bisphosphate metabolic process(GO:0006003) |
0.0 | 0.3 | GO:0060285 | cilium or flagellum-dependent cell motility(GO:0001539) cilium-dependent cell motility(GO:0060285) |
0.0 | 0.2 | GO:0030816 | activation of adenylate cyclase activity(GO:0007190) positive regulation of cAMP metabolic process(GO:0030816) positive regulation of cAMP biosynthetic process(GO:0030819) positive regulation of adenylate cyclase activity(GO:0045762) |
0.0 | 0.2 | GO:2000601 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.0 | 0.0 | GO:0019852 | L-ascorbic acid metabolic process(GO:0019852) water-soluble vitamin biosynthetic process(GO:0042364) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | GO:0000506 | glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506) |
0.0 | 0.1 | GO:0070319 | Golgi to plasma membrane transport vesicle(GO:0070319) |
0.0 | 0.2 | GO:0071818 | BAT3 complex(GO:0071818) |
0.0 | 0.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
0.0 | 0.5 | GO:0035102 | PRC1 complex(GO:0035102) |
0.0 | 0.2 | GO:0002102 | podosome(GO:0002102) |
0.0 | 0.3 | GO:0090665 | dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665) |
0.0 | 0.3 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 0.2 | GO:0031209 | SCAR complex(GO:0031209) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.1 | 0.4 | GO:0035243 | protein-arginine omega-N symmetric methyltransferase activity(GO:0035243) |
0.1 | 0.2 | GO:0048487 | beta-tubulin binding(GO:0048487) |
0.0 | 0.3 | GO:0004839 | ubiquitin activating enzyme activity(GO:0004839) |
0.0 | 0.1 | GO:0031005 | filamin binding(GO:0031005) |
0.0 | 0.2 | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176) |
0.0 | 0.3 | GO:0016868 | intramolecular transferase activity, phosphotransferases(GO:0016868) |
0.0 | 0.2 | GO:0016176 | superoxide-generating NADPH oxidase activity(GO:0016175) superoxide-generating NADPH oxidase activator activity(GO:0016176) |
0.0 | 0.5 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.0 | 0.2 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.0 | 0.2 | GO:0003873 | 6-phosphofructo-2-kinase activity(GO:0003873) |
0.0 | 0.3 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.0 | 0.2 | GO:0016500 | protein-hormone receptor activity(GO:0016500) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 0.3 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.2 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |
0.0 | 0.2 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 0.2 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |