PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
lmx1al | dr11_v1_chr3_+_52806347_52806441 | -0.81 | 2.4e-05 | Click! |
lmx1ba | dr11_v1_chr5_-_5147220_5147336 | -0.38 | 1.1e-01 | Click! |
lmx1bb | dr11_v1_chr8_-_33381913_33381913 | 0.29 | 2.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_29509133 Show fit | 2.46 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr2_-_7246848 Show fit | 1.79 |
ENSDART00000146434
|
zgc:153115 |
|
chr7_+_19552381 Show fit | 1.57 |
ENSDART00000169060
|
si:ch211-212k18.5 |
|
chr12_-_35830625 Show fit | 1.42 |
ENSDART00000180028
|
|
|
chr18_+_19456648 Show fit | 1.33 |
ENSDART00000079695
|
zwilch kinetochore protein |
|
chr2_+_33326522 Show fit | 1.27 |
ENSDART00000056655
|
Kruppel-like factor 17 |
|
chr24_-_21923930 Show fit | 1.14 |
ENSDART00000131944
|
transgelin 3b |
|
chr23_-_17003533 Show fit | 1.13 |
ENSDART00000080545
|
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2 |
|
chr4_+_306036 Show fit | 1.08 |
ENSDART00000103659
|
mesogenin 1 |
|
chr17_+_30369396 Show fit | 1.07 |
ENSDART00000076611
|
growth regulation by estrogen in breast cancer 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0000266 | mitochondrial fission(GO:0000266) |
0.0 | 2.0 | GO:0031018 | endocrine pancreas development(GO:0031018) |
0.4 | 1.3 | GO:0048785 | hatching gland development(GO:0048785) |
0.1 | 1.3 | GO:0072395 | signal transduction involved in cell cycle checkpoint(GO:0072395) |
0.4 | 1.1 | GO:0048341 | paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341) |
0.2 | 1.1 | GO:0032776 | DNA methylation on cytosine(GO:0032776) |
0.1 | 1.1 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
0.0 | 1.1 | GO:0021983 | pituitary gland development(GO:0021983) |
0.3 | 1.0 | GO:0034382 | chylomicron remnant clearance(GO:0034382) triglyceride-rich lipoprotein particle clearance(GO:0071830) intermediate-density lipoprotein particle clearance(GO:0071831) |
0.2 | 1.0 | GO:0009078 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 1.4 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 1.3 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
0.0 | 1.1 | GO:0005795 | Golgi stack(GO:0005795) |
0.2 | 1.0 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.0 | 0.9 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
0.0 | 0.9 | GO:0043186 | P granule(GO:0043186) |
0.1 | 0.7 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
0.0 | 0.7 | GO:0005682 | U5 snRNP(GO:0005682) |
0.0 | 0.7 | GO:0042555 | MCM complex(GO:0042555) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.3 | 1.5 | GO:0009374 | biotin binding(GO:0009374) |
0.3 | 1.0 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.2 | 1.0 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.0 | 1.0 | GO:0001871 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
0.0 | 1.0 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.1 | 0.9 | GO:0008449 | N-acetylglucosamine-6-sulfatase activity(GO:0008449) |
0.3 | 0.8 | GO:0016748 | succinyltransferase activity(GO:0016748) |
0.0 | 0.8 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.0 | 0.8 | GO:0008143 | poly(A) binding(GO:0008143) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 1.2 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.7 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 0.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 0.5 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.5 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
0.0 | 0.5 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 0.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.3 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.3 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.6 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.1 | 1.4 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 1.1 | REACTOME REGULATION OF APOPTOSIS | Genes involved in Regulation of Apoptosis |
0.1 | 0.8 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.1 | 0.8 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 0.7 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 0.6 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 0.6 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.0 | 0.6 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |