PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000015890 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) | |
ENSDARG00000070542 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Bb | |
ENSDARG00000099120 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Bb |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mafbb | dr11_v1_chr11_-_25384213_25384213 | -0.50 | 3.0e-02 | Click! |
mafa | dr11_v1_chr18_+_29403017_29403017 | -0.18 | 4.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_13783604 Show fit | 5.91 |
ENSDART00000149536
ENSDART00000041269 ENSDART00000150102 |
crystallin, beta A2a |
|
chr5_-_30615901 Show fit | 4.00 |
ENSDART00000147769
|
si:ch211-117m20.5 |
|
chr5_-_67471375 Show fit | 3.84 |
ENSDART00000147009
|
si:dkey-251i10.2 |
|
chr25_+_31277415 Show fit | 3.60 |
ENSDART00000036275
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr9_-_22318511 Show fit | 3.11 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr7_+_39386982 Show fit | 2.59 |
ENSDART00000146702
|
troponin I type 2b (skeletal, fast), tandem duplicate 2 |
|
chr9_-_22076368 Show fit | 2.13 |
ENSDART00000128486
|
crystallin, gamma M2a |
|
chr21_+_45496442 Show fit | 1.94 |
ENSDART00000164880
|
si:dkey-223p19.1 |
|
chr20_-_14054083 Show fit | 1.91 |
ENSDART00000009549
|
Rh associated glycoprotein |
|
chr13_+_36770738 Show fit | 1.84 |
ENSDART00000146696
|
atlastin GTPase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.2 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 6.2 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.5 | 1.9 | GO:0015840 | urea transport(GO:0015840) |
0.1 | 1.8 | GO:0048263 | determination of dorsal identity(GO:0048263) |
0.4 | 1.7 | GO:0043084 | copulation(GO:0007620) regulation of epinephrine secretion(GO:0014060) positive regulation of epinephrine secretion(GO:0032812) positive regulation of catecholamine secretion(GO:0033605) penile erection(GO:0043084) epinephrine transport(GO:0048241) epinephrine secretion(GO:0048242) regulation of penile erection(GO:0060405) positive regulation of penile erection(GO:0060406) prolactin secretion(GO:0070459) |
0.1 | 1.6 | GO:0030011 | maintenance of cell polarity(GO:0030011) |
0.1 | 1.6 | GO:0018401 | peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) |
0.0 | 1.6 | GO:0009250 | glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250) |
0.1 | 1.5 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.1 | 1.5 | GO:0010717 | regulation of epithelial to mesenchymal transition(GO:0010717) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.7 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 1.7 | GO:0005770 | late endosome(GO:0005770) |
0.1 | 1.5 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.4 | 1.3 | GO:0032998 | Fc receptor complex(GO:0032997) Fc-epsilon receptor I complex(GO:0032998) |
0.0 | 1.2 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.0 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.0 | 1.0 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
0.0 | 1.0 | GO:0000145 | exocyst(GO:0000145) |
0.1 | 0.9 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.1 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.1 | 1.7 | GO:0051428 | peptide hormone receptor binding(GO:0051428) |
0.1 | 1.6 | GO:0004656 | procollagen-proline 4-dioxygenase activity(GO:0004656) |
0.2 | 1.4 | GO:0048039 | ubiquinone binding(GO:0048039) |
0.4 | 1.3 | GO:0019763 | immunoglobulin receptor activity(GO:0019763) IgE receptor activity(GO:0019767) |
0.0 | 1.2 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.0 | 1.1 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 1.0 | GO:0044325 | ion channel binding(GO:0044325) |
0.2 | 0.9 | GO:0005219 | ryanodine-sensitive calcium-release channel activity(GO:0005219) calcium-induced calcium release activity(GO:0048763) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.0 | 1.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.4 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.0 | 1.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.1 | 0.8 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 0.2 | ST INTERLEUKIN 4 PATHWAY | Interleukin 4 (IL-4) Pathway |
0.0 | 0.1 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
0.1 | 1.5 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.2 | 1.3 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.0 | 1.1 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.1 | 0.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 0.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.3 | REACTOME CD28 DEPENDENT VAV1 PATHWAY | Genes involved in CD28 dependent Vav1 pathway |
0.0 | 0.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.0 | 0.3 | REACTOME KINESINS | Genes involved in Kinesins |