PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000017121 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Ba | |
ENSDARG00000076520 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog b (paralog b) | |
ENSDARG00000100466 | neural retina leucine zipper |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nrl | dr11_v1_chr20_+_661037_661037 | 0.83 | 1.3e-05 | Click! |
mafb | dr11_v1_chr25_+_36674715_36674715 | 0.81 | 2.4e-05 | Click! |
mafba | dr11_v1_chr23_-_3409140_3409140 | -0.28 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22318511 Show fit | 8.99 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr25_-_3503164 Show fit | 6.65 |
ENSDART00000191477
ENSDART00000186345 ENSDART00000180199 |
si:ch211-272n13.7 |
|
chr9_-_22232902 Show fit | 6.60 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr1_+_44439661 Show fit | 6.59 |
ENSDART00000100309
|
crystallin, beta B1, like 2 |
|
chr14_+_49135264 Show fit | 5.97 |
ENSDART00000084119
|
si:ch1073-44g3.1 |
|
chr3_-_61185746 Show fit | 5.91 |
ENSDART00000028219
|
parvalbumin 4 |
|
chr11_-_1291012 Show fit | 5.31 |
ENSDART00000158390
|
ATPase plasma membrane Ca2+ transporting 2 |
|
chr3_-_61203203 Show fit | 5.23 |
ENSDART00000171787
|
parvalbumin 1 |
|
chr8_+_6954984 Show fit | 4.80 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr25_-_4482449 Show fit | 4.61 |
ENSDART00000056278
ENSDART00000149425 |
solute carrier family 25 member 22a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 42.7 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 10.4 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.1 | 7.6 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.8 | 5.7 | GO:0098971 | dendritic transport(GO:0098935) anterograde dendritic transport(GO:0098937) anterograde dendritic transport of neurotransmitter receptor complex(GO:0098971) |
0.0 | 5.5 | GO:0030198 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
0.5 | 4.6 | GO:0015810 | acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490) |
0.6 | 4.4 | GO:0033137 | negative regulation of peptidyl-serine phosphorylation(GO:0033137) |
0.1 | 4.2 | GO:0032012 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.7 | 4.1 | GO:0086013 | membrane repolarization during cardiac muscle cell action potential(GO:0086013) |
0.0 | 4.1 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 20.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 10.0 | GO:0005871 | kinesin complex(GO:0005871) |
0.2 | 8.3 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.0 | 6.3 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.0 | 5.5 | GO:0043005 | neuron projection(GO:0043005) |
0.1 | 5.3 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 4.8 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 4.8 | GO:0001726 | ruffle(GO:0001726) |
0.0 | 4.5 | GO:0045202 | synapse(GO:0045202) |
0.1 | 4.2 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 43.4 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 22.5 | GO:0005509 | calcium ion binding(GO:0005509) |
0.1 | 11.2 | GO:0015293 | symporter activity(GO:0015293) |
0.2 | 9.5 | GO:0044325 | ion channel binding(GO:0044325) |
0.3 | 9.2 | GO:0030165 | PDZ domain binding(GO:0030165) |
0.0 | 9.1 | GO:0051015 | actin filament binding(GO:0051015) |
0.1 | 7.8 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 5.8 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.0 | 5.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 4.9 | GO:0005347 | ATP transmembrane transporter activity(GO:0005347) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 2.7 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.1 | 2.6 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 2.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 2.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 2.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 2.1 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 1.4 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.1 | 1.3 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.1 | 1.2 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 9.4 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.3 | 6.3 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.3 | 4.6 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.2 | 4.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 3.2 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.2 | 2.9 | REACTOME REGULATION OF KIT SIGNALING | Genes involved in Regulation of KIT signaling |
0.2 | 2.6 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 2.6 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.1 | 2.2 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.5 | 2.0 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |