PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000018109 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Ga | |
ENSDARG00000028957 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F | |
ENSDARG00000100097 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Gb | |
ENSDARG00000111050 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mafga | dr11_v1_chr3_-_55404985_55404985 | 0.92 | 2.2e-08 | Click! |
mafgb | dr11_v1_chr11_+_45323455_45323455 | 0.91 | 8.9e-08 | Click! |
maff | dr11_v1_chr12_-_19346678_19346678 | 0.56 | 1.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_32526799 Show fit | 14.46 |
ENSDART00000185755
|
si:ch73-367p23.2 |
|
chr15_-_34418525 Show fit | 5.84 |
ENSDART00000147582
|
alkylglycerol monooxygenase |
|
chr22_+_19289970 Show fit | 4.84 |
ENSDART00000137976
ENSDART00000132386 |
si:dkey-21e2.15 |
|
chr6_-_35446110 Show fit | 4.52 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr20_+_35473288 Show fit | 3.87 |
ENSDART00000047195
|
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 1 |
|
chr8_+_554531 Show fit | 3.84 |
ENSDART00000193623
|
|
|
chr19_-_703898 Show fit | 3.73 |
ENSDART00000181096
ENSDART00000121462 |
solute carrier family 6 (neutral amino acid transporter), member 19a, tandem duplicate 2 |
|
chr12_-_32421046 Show fit | 3.70 |
ENSDART00000075567
|
ectonucleotide pyrophosphatase/phosphodiesterase 7, tandem duplicate 1 |
|
chr15_-_44512461 Show fit | 3.19 |
ENSDART00000155456
|
glutamate receptor, ionotropic, AMPA 4a |
|
chr3_-_39171968 Show fit | 3.16 |
ENSDART00000154494
|
si:dkeyp-57f11.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 8.7 | GO:0046485 | ether lipid metabolic process(GO:0046485) |
0.1 | 7.8 | GO:0070509 | calcium ion import(GO:0070509) |
0.3 | 5.2 | GO:0048769 | sarcomerogenesis(GO:0048769) |
0.1 | 5.0 | GO:0007602 | phototransduction(GO:0007602) |
0.3 | 4.8 | GO:2000601 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.1 | 4.6 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
0.4 | 3.7 | GO:0006685 | sphingomyelin catabolic process(GO:0006685) |
0.0 | 3.6 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.0 | 3.3 | GO:0046839 | phospholipid dephosphorylation(GO:0046839) |
0.1 | 3.0 | GO:2000311 | regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000311) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 7.4 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.3 | 4.8 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 4.5 | GO:0031201 | SNARE complex(GO:0031201) |
0.1 | 4.0 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 3.6 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.9 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.1 | 2.8 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.0 | 2.7 | GO:0005814 | centriole(GO:0005814) |
0.0 | 2.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.0 | 8.7 | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714) |
0.2 | 6.1 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 5.0 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.5 | 4.8 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.0 | 4.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.3 | 3.7 | GO:0004767 | sphingomyelin phosphodiesterase activity(GO:0004767) |
0.0 | 3.5 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 3.3 | GO:0042577 | lipid phosphatase activity(GO:0042577) |
0.2 | 3.2 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.7 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 2.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 2.4 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.2 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 2.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 2.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 1.2 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 1.1 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.8 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.1 | 2.6 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 2.5 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.1 | 2.4 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 2.4 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.2 | 2.2 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.2 | 2.0 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 1.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.4 | 1.2 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.0 | 1.2 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |