PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mafk | dr11_v1_chr3_-_42967698_42967698 | 0.75 | 2.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_30615901 Show fit | 9.37 |
ENSDART00000147769
|
si:ch211-117m20.5 |
|
chr12_-_4683325 Show fit | 6.66 |
ENSDART00000152771
|
si:ch211-255p10.3 |
|
chr5_-_67471375 Show fit | 5.82 |
ENSDART00000147009
|
si:dkey-251i10.2 |
|
chr17_-_12389259 Show fit | 5.06 |
ENSDART00000185724
|
synaptosomal-associated protein, 25b |
|
chr16_-_43026273 Show fit | 5.02 |
ENSDART00000156820
ENSDART00000189080 |
si:dkey-7j14.5 |
|
chr19_+_8506178 Show fit | 4.96 |
ENSDART00000189689
|
S100 calcium binding protein A10a |
|
chr22_+_28337204 Show fit | 4.94 |
ENSDART00000163352
|
interphotoreceptor matrix proteoglycan 2b |
|
chr23_-_27571667 Show fit | 4.88 |
ENSDART00000008174
|
phosphofructokinase, muscle a |
|
chr22_+_1049367 Show fit | 4.83 |
ENSDART00000065380
|
calcium/calmodulin-dependent protein kinase IGa |
|
chr11_+_24002503 Show fit | 4.60 |
ENSDART00000164702
|
chitinase, acidic.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 19.0 | GO:0007601 | visual perception(GO:0007601) |
0.0 | 9.3 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.4 | 7.4 | GO:0006825 | copper ion transport(GO:0006825) |
0.0 | 5.6 | GO:0006955 | immune response(GO:0006955) |
0.4 | 5.1 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.2 | 5.1 | GO:0032233 | positive regulation of actin filament bundle assembly(GO:0032233) |
0.4 | 4.9 | GO:0006007 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.4 | 4.6 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.1 | 4.1 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.1 | 4.1 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.3 | GO:0005615 | extracellular space(GO:0005615) |
1.1 | 9.2 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.2 | 6.7 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 6.0 | GO:0030424 | axon(GO:0030424) |
0.0 | 5.4 | GO:0043025 | neuronal cell body(GO:0043025) |
0.8 | 5.1 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.4 | 4.9 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.1 | 4.7 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 4.4 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.1 | 4.1 | GO:0005861 | troponin complex(GO:0005861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 14.7 | GO:0019905 | syntaxin binding(GO:0019905) |
0.3 | 11.1 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.0 | 9.6 | GO:0003779 | actin binding(GO:0003779) |
0.1 | 8.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
1.3 | 6.7 | GO:0016531 | copper chaperone activity(GO:0016531) |
0.2 | 5.8 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.4 | 4.9 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.1 | 4.7 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.4 | 4.6 | GO:0004568 | chitinase activity(GO:0004568) |
0.3 | 4.0 | GO:0008510 | sodium:bicarbonate symporter activity(GO:0008510) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 3.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 3.4 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 2.6 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 2.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 2.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 1.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 1.8 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 1.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.6 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.6 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 3.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.4 | 3.2 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.2 | 2.9 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 2.9 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.2 | 1.7 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.1 | 1.6 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.1 | 1.5 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 1.5 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 1.5 | REACTOME G ALPHA Q SIGNALLING EVENTS | Genes involved in G alpha (q) signalling events |