PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
maza | dr11_v1_chr3_-_21106093_21106093 | -0.43 | 6.7e-02 | Click! |
si:ch211-166g5.4 | dr11_v1_chr12_-_3773869_3773869 | -0.33 | 1.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_6954984 Show fit | 23.23 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr3_-_30861177 Show fit | 19.24 |
ENSDART00000154811
|
SH3 and multiple ankyrin repeat domains 1 |
|
chr2_-_43168292 Show fit | 18.31 |
ENSDART00000132588
|
cAMP responsive element modulator a |
|
chr18_-_16123222 Show fit | 17.87 |
ENSDART00000061189
|
sarcospan (Kras oncogene-associated gene) |
|
chr19_-_5125663 Show fit | 17.63 |
ENSDART00000005547
ENSDART00000132642 |
guanine nucleotide binding protein (G protein), beta polypeptide 3b |
|
chr11_+_36989696 Show fit | 17.43 |
ENSDART00000045888
|
transketolase a |
|
chr14_-_30642819 Show fit | 16.50 |
ENSDART00000078154
|
neuronal PAS domain protein 4a |
|
chr5_-_67878064 Show fit | 15.91 |
ENSDART00000111203
|
transgelin 3a |
|
chr21_+_1143141 Show fit | 15.58 |
ENSDART00000178294
|
|
|
chr11_-_44030962 Show fit | 14.14 |
ENSDART00000171910
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 35.8 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
1.6 | 34.5 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 30.6 | GO:0051260 | protein homooligomerization(GO:0051260) |
3.5 | 17.4 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
0.5 | 16.8 | GO:0048814 | regulation of dendrite morphogenesis(GO:0048814) |
3.3 | 16.5 | GO:0060080 | inhibitory postsynaptic potential(GO:0060080) |
0.4 | 16.2 | GO:0021854 | hypothalamus development(GO:0021854) |
0.2 | 16.2 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.2 | 15.9 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.2 | 15.5 | GO:0050919 | negative chemotaxis(GO:0050919) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 88.6 | GO:0016021 | integral component of membrane(GO:0016021) |
0.0 | 40.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.6 | 32.9 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
1.0 | 28.0 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
0.3 | 21.0 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.4 | 20.5 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 20.3 | GO:0005829 | cytosol(GO:0005829) |
0.3 | 19.2 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.6 | 18.9 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
2.7 | 18.6 | GO:0043194 | axon initial segment(GO:0043194) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 35.1 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
0.6 | 31.0 | GO:0044325 | ion channel binding(GO:0044325) |
2.9 | 26.0 | GO:0008273 | calcium, potassium:sodium antiporter activity(GO:0008273) |
0.7 | 20.5 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
1.2 | 19.9 | GO:0048495 | Roundabout binding(GO:0048495) |
0.1 | 19.3 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.6 | 18.9 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.2 | 17.5 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
2.9 | 17.4 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
0.4 | 16.8 | GO:0008013 | beta-catenin binding(GO:0008013) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 9.4 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.1 | 9.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.5 | 8.9 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.2 | 8.4 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.5 | 7.5 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 6.3 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.2 | 6.3 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.1 | 5.9 | PID NOTCH PATHWAY | Notch signaling pathway |
0.3 | 5.7 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 4.7 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 17.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 15.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.6 | 13.9 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.7 | 13.8 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.6 | 13.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.4 | 12.3 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.6 | 8.8 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.7 | 8.5 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.3 | 8.5 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.7 | 8.1 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |