PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mbd2 | dr11_v1_chr5_-_1047222_1047222 | 0.83 | 1.2e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_68562464 Show fit | 3.46 |
ENSDART00000192954
|
|
|
chr4_-_77557279 Show fit | 2.96 |
ENSDART00000180113
|
|
|
chr2_-_56635744 Show fit | 2.64 |
ENSDART00000167790
ENSDART00000168160 |
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b |
|
chr22_-_12862415 Show fit | 2.00 |
ENSDART00000145156
ENSDART00000137280 |
glutaminase a |
|
chr21_+_1143141 Show fit | 1.89 |
ENSDART00000178294
|
|
|
chr7_+_2467057 Show fit | 1.79 |
ENSDART00000154517
|
si:dkey-125e8.3 |
|
chr14_+_14992909 Show fit | 1.62 |
ENSDART00000182203
|
|
|
chr9_-_21936841 Show fit | 1.58 |
ENSDART00000144843
|
LIM domain 7a |
|
chr18_+_3579829 Show fit | 1.51 |
ENSDART00000158763
ENSDART00000182850 ENSDART00000162754 ENSDART00000178789 ENSDART00000172656 |
leucine-rich repeats and calponin homology (CH) domain containing 3 |
|
chr25_+_34407529 Show fit | 1.48 |
ENSDART00000156751
|
si:dkey-37f18.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0046488 | phosphatidylinositol metabolic process(GO:0046488) |
0.3 | 2.0 | GO:0006543 | glutamate biosynthetic process(GO:0006537) glutamine catabolic process(GO:0006543) |
0.0 | 1.7 | GO:0042157 | lipoprotein metabolic process(GO:0042157) |
0.1 | 1.6 | GO:0097320 | membrane tubulation(GO:0097320) |
0.3 | 1.5 | GO:0002159 | desmosome assembly(GO:0002159) |
0.5 | 1.4 | GO:0014014 | negative regulation of gliogenesis(GO:0014014) |
0.4 | 1.3 | GO:0043553 | negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553) negative regulation of lipid kinase activity(GO:0090219) |
0.0 | 1.3 | GO:0045332 | phospholipid translocation(GO:0045332) |
0.1 | 1.2 | GO:0035372 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
0.0 | 1.1 | GO:0030901 | midbrain development(GO:0030901) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.1 | 1.0 | GO:0030057 | desmosome(GO:0030057) |
0.3 | 0.9 | GO:0010369 | chromocenter(GO:0010369) |
0.1 | 0.9 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 0.9 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 0.8 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.1 | 0.5 | GO:0031673 | H zone(GO:0031673) |
0.1 | 0.5 | GO:0035060 | brahma complex(GO:0035060) |
0.0 | 0.5 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 0.3 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | GO:0016307 | phosphatidylinositol phosphate kinase activity(GO:0016307) |
0.2 | 2.0 | GO:0004359 | glutaminase activity(GO:0004359) |
0.0 | 1.8 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.2 | 1.5 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.0 | 1.5 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.0 | 1.3 | GO:1901981 | phosphatidylinositol phosphate binding(GO:1901981) |
0.0 | 1.2 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.2 | 1.1 | GO:0070016 | armadillo repeat domain binding(GO:0070016) |
0.0 | 1.1 | GO:0051018 | protein kinase A binding(GO:0051018) |
0.0 | 1.1 | GO:0004707 | MAP kinase activity(GO:0004707) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.5 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.4 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.4 | PID RHOA PATHWAY | RhoA signaling pathway |
0.0 | 0.4 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.0 | 0.3 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.1 | 1.4 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 1.2 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 1.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.1 | 0.8 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.1 | 0.8 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 0.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.4 | REACTOME FGFR LIGAND BINDING AND ACTIVATION | Genes involved in FGFR ligand binding and activation |
0.0 | 0.2 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |