PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mecom | dr11_v1_chr15_-_35406564_35406564 | -0.82 | 1.4e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_26304386 Show fit | 3.59 |
ENSDART00000175416
|
otospiralin |
|
chr3_-_61203203 Show fit | 2.99 |
ENSDART00000171787
|
parvalbumin 1 |
|
chr2_-_51794472 Show fit | 2.80 |
ENSDART00000186652
|
|
|
chr10_-_22854758 Show fit | 2.74 |
ENSDART00000079449
|
actinodin3 |
|
chr23_+_40410644 Show fit | 2.28 |
ENSDART00000056328
|
ELOVL fatty acid elongase 4b |
|
chr13_+_3252950 Show fit | 2.08 |
ENSDART00000020671
|
peripherin 2b (retinal degeneration, slow) |
|
chr25_-_12923482 Show fit | 1.92 |
ENSDART00000161754
|
|
|
chr14_+_32838110 Show fit | 1.79 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr17_-_125091 Show fit | 1.68 |
ENSDART00000158825
|
actin, alpha, cardiac muscle 1b |
|
chr3_-_22228602 Show fit | 1.62 |
ENSDART00000017750
|
myosin, light chain 4, alkali; atrial, embryonic |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.0 | GO:0019367 | fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626) |
0.3 | 3.2 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.0 | 2.9 | GO:0007605 | sensory perception of sound(GO:0007605) |
0.1 | 2.0 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.0 | 1.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 1.6 | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic(GO:0090502) |
0.0 | 1.6 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.1 | 1.5 | GO:0060012 | synaptic transmission, glycinergic(GO:0060012) |
0.4 | 1.4 | GO:1990697 | protein depalmitoleylation(GO:1990697) |
0.2 | 1.2 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.0 | 3.6 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 1.8 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 1.7 | GO:0005869 | dynactin complex(GO:0005869) |
0.2 | 1.5 | GO:1990726 | Lsm1-7-Pat1 complex(GO:1990726) |
0.0 | 1.5 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 1.2 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.0 | 1.1 | GO:0046930 | pore complex(GO:0046930) |
0.0 | 0.8 | GO:0005771 | multivesicular body(GO:0005771) |
0.0 | 0.6 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | GO:0032266 | phosphatidylinositol-3-phosphate binding(GO:0032266) |
0.2 | 4.0 | GO:0009922 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.0 | 3.6 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 1.7 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 1.6 | GO:0031729 | CCR1 chemokine receptor binding(GO:0031726) CCR4 chemokine receptor binding(GO:0031729) |
0.2 | 1.5 | GO:0016934 | extracellular-glycine-gated ion channel activity(GO:0016933) extracellular-glycine-gated chloride channel activity(GO:0016934) |
0.4 | 1.4 | GO:1990699 | palmitoleyl hydrolase activity(GO:1990699) |
0.1 | 1.3 | GO:0004526 | ribonuclease P activity(GO:0004526) |
0.4 | 1.2 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.4 | 1.1 | GO:0048030 | disaccharide binding(GO:0048030) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.2 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 0.6 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 0.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.5 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.3 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 0.2 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 1.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 1.2 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.9 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.1 | 0.7 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 0.5 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.5 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.0 | 0.5 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 0.4 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.0 | 0.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |