PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mecp2 | dr11_v1_chr8_-_7637626_7637640 | 0.62 | 4.5e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_68563862 Show fit | 8.09 |
ENSDART00000182970
|
|
|
chr4_-_77557279 Show fit | 7.92 |
ENSDART00000180113
|
|
|
chr4_-_68564988 Show fit | 7.11 |
ENSDART00000191212
|
|
|
chr5_-_825920 Show fit | 5.24 |
ENSDART00000126982
|
zgc:158463 |
|
chr3_+_31396149 Show fit | 2.98 |
ENSDART00000151423
ENSDART00000193580 |
complement component 1, q subcomponent-like 3b |
|
chr11_+_39969048 Show fit | 2.75 |
ENSDART00000193693
|
period circadian clock 3 |
|
chr19_-_11846958 Show fit | 2.66 |
ENSDART00000148516
|
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 |
|
chr19_-_47587719 Show fit | 2.58 |
ENSDART00000111108
|
|
|
chr9_-_32158288 Show fit | 2.55 |
ENSDART00000037182
|
ankyrin repeat domain 44 |
|
chr4_-_77561679 Show fit | 2.53 |
ENSDART00000180809
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.4 | GO:0043087 | regulation of GTPase activity(GO:0043087) |
0.3 | 4.3 | GO:2000369 | regulation of clathrin-mediated endocytosis(GO:2000369) |
0.0 | 4.1 | GO:0034765 | regulation of ion transmembrane transport(GO:0034765) |
0.0 | 3.6 | GO:0048511 | rhythmic process(GO:0048511) |
0.0 | 3.3 | GO:0006869 | lipid transport(GO:0006869) |
0.9 | 2.7 | GO:0070940 | dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940) |
0.1 | 2.7 | GO:0043153 | entrainment of circadian clock by photoperiod(GO:0043153) |
0.1 | 2.6 | GO:0045746 | negative regulation of Notch signaling pathway(GO:0045746) |
0.0 | 2.6 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.5 | 2.2 | GO:0010807 | regulation of synaptic vesicle priming(GO:0010807) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.6 | GO:0000786 | nucleosome(GO:0000786) |
0.0 | 2.4 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
0.8 | 2.3 | GO:0031213 | RSF complex(GO:0031213) |
0.5 | 2.2 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.2 | 2.1 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 2.1 | GO:0044545 | NSL complex(GO:0044545) |
0.0 | 2.1 | GO:0032587 | ruffle membrane(GO:0032587) |
0.3 | 1.9 | GO:0043194 | axon initial segment(GO:0043194) |
0.2 | 1.8 | GO:0033010 | paranodal junction(GO:0033010) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.9 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.0 | 5.5 | GO:0042393 | histone binding(GO:0042393) |
0.4 | 4.3 | GO:0035612 | AP-2 adaptor complex binding(GO:0035612) |
0.1 | 3.6 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
0.0 | 3.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.1 | 3.3 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
0.2 | 3.0 | GO:0030552 | cAMP binding(GO:0030552) |
0.3 | 2.7 | GO:0001222 | transcription corepressor binding(GO:0001222) |
0.3 | 2.7 | GO:0008420 | CTD phosphatase activity(GO:0008420) |
0.0 | 2.4 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 2.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.7 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 1.5 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 1.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 1.3 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.1 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 1.0 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 0.9 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.9 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | REACTOME REGULATION OF KIT SIGNALING | Genes involved in Regulation of KIT signaling |
0.0 | 2.9 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.1 | 2.7 | REACTOME ABORTIVE ELONGATION OF HIV1 TRANSCRIPT IN THE ABSENCE OF TAT | Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat |
0.1 | 2.4 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 1.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.2 | 1.7 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.1 | 1.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 1.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 1.5 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 1.5 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |