PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2aa | dr11_v1_chr18_+_23249519_23249519 | 0.93 | 1.2e-08 | Click! |
mef2ab | dr11_v1_chr7_+_15659280_15659280 | 0.54 | 1.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 15.47 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr9_-_22205682 Show fit | 12.57 |
ENSDART00000101869
|
crystallin, gamma M2d12 |
|
chr8_-_11112058 Show fit | 12.09 |
ENSDART00000042755
|
adenosine monophosphate deaminase 1 (isoform M) |
|
chr9_-_22188117 Show fit | 9.68 |
ENSDART00000132890
|
crystallin, gamma M2d17 |
|
chr5_+_45677781 Show fit | 9.28 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr5_+_51597677 Show fit | 9.16 |
ENSDART00000048210
ENSDART00000184797 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr12_-_4781801 Show fit | 8.61 |
ENSDART00000167490
ENSDART00000121718 |
microtubule-associated protein tau a |
|
chr8_+_34731982 Show fit | 7.68 |
ENSDART00000066050
|
4-hydroxyphenylpyruvate dioxygenase b |
|
chr7_-_27686021 Show fit | 6.76 |
ENSDART00000079112
ENSDART00000100989 |
calcitonin/calcitonin-related polypeptide, alpha |
|
chr3_+_32526263 Show fit | 6.38 |
ENSDART00000150897
|
si:ch73-367p23.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 32.3 | GO:0007601 | visual perception(GO:0007601) |
1.1 | 15.0 | GO:0032264 | IMP salvage(GO:0032264) |
0.3 | 9.3 | GO:0051180 | vitamin transport(GO:0051180) |
0.7 | 9.2 | GO:0006599 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.1 | 8.5 | GO:0001756 | somitogenesis(GO:0001756) |
0.1 | 8.4 | GO:0030336 | negative regulation of cell migration(GO:0030336) |
1.3 | 7.7 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.2 | 7.4 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.2 | 6.8 | GO:0055064 | chloride ion homeostasis(GO:0055064) |
0.4 | 6.7 | GO:0016486 | peptide hormone processing(GO:0016486) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.0 | GO:0005739 | mitochondrion(GO:0005739) |
0.3 | 11.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 9.6 | GO:0005874 | microtubule(GO:0005874) |
0.2 | 8.9 | GO:0031941 | filamentous actin(GO:0031941) |
0.3 | 8.4 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 5.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.3 | 5.8 | GO:0031430 | M band(GO:0031430) |
0.3 | 5.5 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.1 | 5.3 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 5.3 | GO:0043235 | receptor complex(GO:0043235) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 27.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 23.5 | GO:0005509 | calcium ion binding(GO:0005509) |
0.4 | 15.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
5.1 | 15.2 | GO:0005499 | vitamin D binding(GO:0005499) |
1.4 | 15.0 | GO:0003876 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
0.0 | 13.6 | GO:0008017 | microtubule binding(GO:0008017) |
0.7 | 9.2 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.4 | 8.9 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
2.6 | 7.7 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.3 | 7.3 | GO:0005523 | tropomyosin binding(GO:0005523) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.9 | NABA COLLAGENS | Genes encoding collagen proteins |
0.2 | 4.4 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 3.7 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.1 | 2.2 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.0 | 1.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.2 | 1.3 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.0 | 1.2 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.1 | 1.0 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 1.0 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.1 | 0.8 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 12.1 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.4 | 9.3 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.1 | 6.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.3 | 6.8 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.7 | 6.7 | REACTOME PEPTIDE HORMONE BIOSYNTHESIS | Genes involved in Peptide hormone biosynthesis |
0.2 | 6.6 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 6.0 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.2 | 5.2 | REACTOME GLUCAGON TYPE LIGAND RECEPTORS | Genes involved in Glucagon-type ligand receptors |
1.7 | 5.0 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.3 | 4.2 | REACTOME HYALURONAN METABOLISM | Genes involved in Hyaluronan metabolism |