PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2b | dr11_v1_chr22_+_18187857_18187857 | 0.36 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 10.52 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr5_+_51597677 Show fit | 7.06 |
ENSDART00000048210
ENSDART00000184797 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr25_+_29160102 Show fit | 7.01 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr8_+_22930627 Show fit | 3.30 |
ENSDART00000187860
|
synaptophysin a |
|
chr9_+_31795343 Show fit | 3.29 |
ENSDART00000139584
|
integrin, beta-like 1 |
|
chr10_-_22845485 Show fit | 3.25 |
ENSDART00000079454
|
vesicle-associated membrane protein 2 |
|
chr23_+_44614056 Show fit | 3.11 |
ENSDART00000188379
|
enolase 3, (beta, muscle) |
|
chr6_-_14139503 Show fit | 3.08 |
ENSDART00000089577
|
calcium channel, voltage-dependent, beta 4b subunit |
|
chr7_+_14291323 Show fit | 3.04 |
ENSDART00000053521
|
Rh family, C glycoprotein a |
|
chr6_-_40722480 Show fit | 2.92 |
ENSDART00000188187
|
kelch repeat and BTB (POZ) domain containing 12 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.2 | GO:0006096 | glycolytic process(GO:0006096) |
0.5 | 7.1 | GO:0042396 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.6 | 4.6 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.3 | 4.5 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.2 | 3.7 | GO:0016486 | peptide hormone processing(GO:0016486) |
0.1 | 3.3 | GO:0033627 | cell adhesion mediated by integrin(GO:0033627) |
0.2 | 3.2 | GO:0035493 | SNARE complex assembly(GO:0035493) |
0.1 | 3.1 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.4 | 3.0 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.6 | 2.9 | GO:0023041 | neuronal signal transduction(GO:0023041) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.3 | GO:0031430 | M band(GO:0031430) |
0.1 | 5.1 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.6 | 4.6 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 3.8 | GO:0030133 | transport vesicle(GO:0030133) |
0.0 | 3.6 | GO:0005667 | transcription factor complex(GO:0005667) |
0.1 | 3.3 | GO:0008305 | integrin complex(GO:0008305) |
0.1 | 3.2 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 3.1 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 2.9 | GO:0030867 | rough endoplasmic reticulum membrane(GO:0030867) |
0.5 | 2.8 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.4 | GO:0005509 | calcium ion binding(GO:0005509) |
0.2 | 9.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.5 | 7.1 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
1.2 | 7.0 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.6 | 4.6 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.0 | 3.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 3.6 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.0 | 3.6 | GO:0051015 | actin filament binding(GO:0051015) |
0.1 | 3.3 | GO:0005178 | integrin binding(GO:0005178) |
0.1 | 3.1 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 2.6 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 2.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 0.8 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.4 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.0 | 0.4 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.0 | 0.2 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.7 | REACTOME PEPTIDE HORMONE BIOSYNTHESIS | Genes involved in Peptide hormone biosynthesis |
0.2 | 3.3 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
1.1 | 3.2 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.0 | 2.6 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.0 | 2.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 2.2 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.1 | 1.9 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 1.9 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.5 | 1.6 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.0 | 0.7 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |