PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2cb | dr11_v1_chr5_-_48285756_48285756 | 0.72 | 5.0e-04 | Click! |
mef2ca | dr11_v1_chr10_-_43611643_43611718 | 0.52 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_45677781 Show fit | 4.60 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr25_+_31222069 Show fit | 4.39 |
ENSDART00000159373
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr3_-_61205711 Show fit | 4.27 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr24_-_4765740 Show fit | 3.86 |
ENSDART00000121576
|
carboxypeptidase B1 (tissue) |
|
chr14_+_32838110 Show fit | 3.78 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr6_-_12588044 Show fit | 3.41 |
ENSDART00000047896
|
solute carrier family 15 (oligopeptide transporter), member 1b |
|
chr12_-_4028079 Show fit | 3.22 |
ENSDART00000128676
|
si:ch211-180a12.2 |
|
chr21_+_11684830 Show fit | 3.14 |
ENSDART00000147473
|
proprotein convertase subtilisin/kexin type 1 |
|
chr5_+_51597677 Show fit | 3.09 |
ENSDART00000048210
ENSDART00000184797 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr2_+_16536453 Show fit | 2.94 |
ENSDART00000100287
|
G protein-coupled receptor kinase 7a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 6.5 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.4 | 5.6 | GO:0016486 | peptide hormone processing(GO:0016486) |
0.1 | 4.9 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 4.5 | GO:0015914 | phospholipid transport(GO:0015914) |
0.0 | 3.9 | GO:0006821 | chloride transport(GO:0006821) |
0.0 | 3.8 | GO:0071466 | cellular response to xenobiotic stimulus(GO:0071466) |
0.4 | 3.4 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.1 | 3.4 | GO:0051180 | vitamin transport(GO:0051180) |
0.0 | 3.3 | GO:0008543 | fibroblast growth factor receptor signaling pathway(GO:0008543) |
0.2 | 3.2 | GO:0048769 | sarcomerogenesis(GO:0048769) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 4.4 | GO:0031430 | M band(GO:0031430) |
0.1 | 3.9 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.2 | 3.2 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 2.7 | GO:0030133 | transport vesicle(GO:0030133) |
0.0 | 2.6 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.4 | 2.5 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.1 | 2.5 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.0 | 2.3 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.5 | 2.1 | GO:0031673 | H zone(GO:0031673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.1 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 5.6 | GO:0051015 | actin filament binding(GO:0051015) |
0.1 | 5.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.2 | 4.9 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
1.5 | 4.6 | GO:0005499 | vitamin D binding(GO:0005499) |
0.0 | 4.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.5 | 3.6 | GO:0008526 | phosphatidylinositol transporter activity(GO:0008526) |
0.5 | 3.4 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.1 | 3.4 | GO:0005104 | fibroblast growth factor receptor binding(GO:0005104) |
0.2 | 3.2 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 1.3 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 1.2 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 1.2 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 1.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 1.1 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 0.7 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.0 | 0.6 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.0 | 0.5 | PID RHOA PATHWAY | RhoA signaling pathway |
0.0 | 0.5 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 5.6 | REACTOME PEPTIDE HORMONE BIOSYNTHESIS | Genes involved in Peptide hormone biosynthesis |
0.2 | 4.6 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
1.0 | 2.9 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.3 | 2.6 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.7 | 2.1 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.1 | 2.1 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 1.8 | REACTOME CTLA4 INHIBITORY SIGNALING | Genes involved in CTLA4 inhibitory signaling |
0.1 | 1.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 1.4 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.1 | 1.3 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |