PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2d | dr11_v1_chr16_-_29164379_29164379 | -0.89 | 4.3e-07 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 13.63 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr24_-_24038800 Show fit | 9.03 |
ENSDART00000080549
|
lysozyme |
|
chr8_-_11112058 Show fit | 8.62 |
ENSDART00000042755
|
adenosine monophosphate deaminase 1 (isoform M) |
|
chr25_+_29160102 Show fit | 8.42 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr10_+_26800213 Show fit | 7.33 |
ENSDART00000078996
|
arrestin 3a, retinal (X-arrestin) |
|
chr12_-_17712393 Show fit | 7.04 |
ENSDART00000143534
ENSDART00000010144 |
parvalbumin 2 |
|
chr1_+_7546259 Show fit | 6.97 |
ENSDART00000015732
|
myosin, light polypeptide 3, skeletal muscle |
|
chr12_+_16440708 Show fit | 6.65 |
ENSDART00000113810
|
ankyrin repeat domain 1b (cardiac muscle) |
|
chr12_-_17707449 Show fit | 6.60 |
ENSDART00000142427
ENSDART00000034914 |
parvalbumin 3 |
|
chr5_+_51597677 Show fit | 6.34 |
ENSDART00000048210
ENSDART00000184797 |
creatine kinase, mitochondrial 2b (sarcomeric) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 14.8 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.8 | 10.5 | GO:0032264 | IMP salvage(GO:0032264) |
0.2 | 9.4 | GO:0006096 | glycolytic process(GO:0006096) |
0.7 | 9.0 | GO:0006603 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.1 | 8.7 | GO:0048469 | cell maturation(GO:0048469) |
0.2 | 7.3 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
1.4 | 7.0 | GO:0003210 | cardiac atrium formation(GO:0003210) |
0.4 | 6.1 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.7 | 5.7 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.1 | 5.7 | GO:0032922 | circadian regulation of gene expression(GO:0032922) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.3 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 12.1 | GO:0005739 | mitochondrion(GO:0005739) |
0.5 | 10.7 | GO:0031430 | M band(GO:0031430) |
0.0 | 7.4 | GO:0005667 | transcription factor complex(GO:0005667) |
0.2 | 7.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 6.2 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.2 | 5.9 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.7 | 5.7 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.1 | 5.5 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.4 | 5.0 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 22.5 | GO:0005509 | calcium ion binding(GO:0005509) |
0.4 | 15.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 13.5 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
1.0 | 10.5 | GO:0047623 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
2.3 | 9.0 | GO:0003796 | lysozyme activity(GO:0003796) |
0.7 | 9.0 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
1.4 | 8.4 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
1.6 | 6.5 | GO:0061629 | RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629) |
0.1 | 6.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.7 | 5.7 | GO:0015168 | glycerol transmembrane transporter activity(GO:0015168) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.4 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.2 | 3.0 | PID REELIN PATHWAY | Reelin signaling pathway |
0.1 | 2.8 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 2.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 2.1 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 1.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 1.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 1.1 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.0 | 1.0 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.0 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 9.3 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.9 | 8.6 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.3 | 7.6 | REACTOME AMYLOIDS | Genes involved in Amyloids |
1.5 | 4.4 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.2 | 4.3 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 4.3 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
1.4 | 4.1 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.0 | 3.9 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.4 | 2.9 | REACTOME PEPTIDE HORMONE BIOSYNTHESIS | Genes involved in Peptide hormone biosynthesis |
0.2 | 2.0 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |