PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
meis1a | dr11_v1_chr1_+_51496862_51496862 | -0.86 | 2.2e-06 | Click! |
meis1b | dr11_v1_chr13_-_5569562_5569562 | -0.58 | 8.9e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_1796426 Show fit | 8.10 |
ENSDART00000173330
|
low density lipoprotein receptor-related protein 1Aa |
|
chr16_+_52512025 Show fit | 7.43 |
ENSDART00000056095
|
fatty acid binding protein 10a, liver basic |
|
chr20_+_35473288 Show fit | 3.50 |
ENSDART00000047195
|
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 1 |
|
chr19_+_40856534 Show fit | 3.39 |
ENSDART00000051950
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr25_-_4482449 Show fit | 3.39 |
ENSDART00000056278
ENSDART00000149425 |
solute carrier family 25 member 22a |
|
chr11_+_25459697 Show fit | 3.32 |
ENSDART00000161481
|
opsin 1 (cone pigments), short-wave-sensitive 2 |
|
chr19_+_48111285 Show fit | 3.22 |
ENSDART00000169420
|
NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 |
|
chr15_+_19652807 Show fit | 3.19 |
ENSDART00000134321
ENSDART00000054426 |
lens intrinsic membrane protein 2.3 |
|
chr13_-_7031033 Show fit | 3.12 |
ENSDART00000193211
|
|
|
chr16_-_13612650 Show fit | 3.04 |
ENSDART00000080372
|
D site albumin promoter binding protein b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.1 | GO:1901342 | regulation of vasculature development(GO:1901342) |
0.4 | 4.9 | GO:0006707 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.0 | 4.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 4.0 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.2 | 3.7 | GO:0050885 | neuromuscular process controlling balance(GO:0050885) |
0.3 | 3.4 | GO:0015800 | acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490) |
0.2 | 3.4 | GO:0015781 | pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481) |
0.2 | 3.4 | GO:1990035 | calcium ion import across plasma membrane(GO:0098703) calcium ion import into cell(GO:1990035) |
0.2 | 3.3 | GO:0055003 | cardiac myofibril assembly(GO:0055003) |
0.1 | 3.3 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.4 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 4.5 | GO:0042383 | sarcolemma(GO:0042383) |
0.0 | 4.1 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 4.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.4 | 3.4 | GO:0032783 | ELL-EAF complex(GO:0032783) |
0.0 | 3.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.1 | 3.3 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 2.9 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 2.9 | GO:0005770 | late endosome(GO:0005770) |
0.0 | 2.8 | GO:0005865 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.1 | GO:0005509 | calcium ion binding(GO:0005509) |
0.0 | 10.0 | GO:0051015 | actin filament binding(GO:0051015) |
1.2 | 7.4 | GO:0032052 | bile acid binding(GO:0032052) |
0.3 | 6.4 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.9 | 5.1 | GO:0033781 | cholesterol 24-hydroxylase activity(GO:0033781) |
0.1 | 5.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 4.6 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.3 | 3.4 | GO:0005459 | UDP-galactose transmembrane transporter activity(GO:0005459) |
0.3 | 3.4 | GO:0015183 | L-aspartate transmembrane transporter activity(GO:0015183) |
0.3 | 3.4 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.4 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 2.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 1.8 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 1.0 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.0 | 0.9 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.8 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.1 | 0.6 | PID ER NONGENOMIC PATHWAY | Plasma membrane estrogen receptor signaling |
0.1 | 0.6 | PID IL1 PATHWAY | IL1-mediated signaling events |
0.0 | 0.4 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 0.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 6.4 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.2 | 5.1 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 4.5 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.1 | 3.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.3 | 2.0 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 1.9 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.2 | 1.8 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.1 | 1.6 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 1.5 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.3 | 1.3 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |