PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mxtx1 | dr11_v1_chr13_-_21660203_21660203 | 0.92 | 3.4e-08 | Click! |
sebox | dr11_v1_chr5_+_67371650_67371650 | -0.49 | 3.3e-02 | Click! |
mixl1 | dr11_v1_chr20_-_43723860_43723860 | 0.44 | 6.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_15440841 Show fit | 1.26 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr16_+_29509133 Show fit | 1.25 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr19_+_15441022 Show fit | 1.06 |
ENSDART00000098970
ENSDART00000140276 |
lin-28 homolog A (C. elegans) |
|
chr23_-_17003533 Show fit | 0.98 |
ENSDART00000080545
|
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2 |
|
chr1_-_55248496 Show fit | 0.94 |
ENSDART00000098615
|
nanos homolog 3 |
|
chr21_-_23331619 Show fit | 0.81 |
ENSDART00000007806
|
zinc finger and BTB domain containing 16a |
|
chr17_+_16046132 Show fit | 0.76 |
ENSDART00000155005
|
si:ch73-204p21.2 |
|
chr17_+_16046314 Show fit | 0.73 |
ENSDART00000154554
ENSDART00000154338 ENSDART00000155336 |
si:ch73-204p21.2 |
|
chr18_+_19456648 Show fit | 0.71 |
ENSDART00000079695
|
zwilch kinetochore protein |
|
chr5_-_12219572 Show fit | 0.66 |
ENSDART00000167834
|
nitric oxide synthase 1 (neuronal) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.0 | GO:0032776 | DNA methylation on cytosine(GO:0032776) |
0.2 | 0.9 | GO:0030718 | germ-line stem cell population maintenance(GO:0030718) |
0.0 | 0.9 | GO:0000266 | mitochondrial fission(GO:0000266) |
0.1 | 0.8 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
0.2 | 0.7 | GO:0098924 | retrograde trans-synaptic signaling by soluble gas(GO:0098923) retrograde trans-synaptic signaling by nitric oxide(GO:0098924) |
0.1 | 0.7 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.1 | 0.7 | GO:0072395 | signal transduction involved in cell cycle checkpoint(GO:0072395) |
0.0 | 0.7 | GO:0035803 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
0.2 | 0.6 | GO:0048785 | hatching gland development(GO:0048785) |
0.1 | 0.6 | GO:0000012 | single strand break repair(GO:0000012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0043186 | P granule(GO:0043186) |
0.1 | 0.7 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 0.7 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
0.0 | 0.6 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 0.5 | GO:0000818 | nuclear MIS12/MIND complex(GO:0000818) |
0.1 | 0.5 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.0 | 0.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
0.0 | 0.5 | GO:0036038 | MKS complex(GO:0036038) |
0.1 | 0.4 | GO:0070724 | BMP receptor complex(GO:0070724) |
0.1 | 0.4 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.0 | 1.1 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.2 | 0.9 | GO:0009374 | biotin binding(GO:0009374) |
0.1 | 0.7 | GO:0004517 | nitric-oxide synthase activity(GO:0004517) |
0.1 | 0.7 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.0 | 0.7 | GO:0032190 | acrosin binding(GO:0032190) |
0.2 | 0.6 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.0 | 0.6 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
0.0 | 0.6 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.0 | 0.6 | GO:0015036 | disulfide oxidoreductase activity(GO:0015036) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 0.5 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.0 | 0.6 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
0.0 | 0.6 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 0.5 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 0.4 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 0.4 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 0.4 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.3 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.0 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 0.2 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |