PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
msx1a | dr11_v1_chr14_-_12822_12847 | -0.92 | 3.0e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_12270857 Show fit | 5.03 |
ENSDART00000170093
|
si:dkey-36i7.3 |
|
chr11_+_30244356 Show fit | 4.05 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr3_-_50443607 Show fit | 3.88 |
ENSDART00000074036
|
recoverin a |
|
chr23_+_40460333 Show fit | 3.62 |
ENSDART00000184658
|
SOGA family member 3b |
|
chr17_-_12389259 Show fit | 3.62 |
ENSDART00000185724
|
synaptosomal-associated protein, 25b |
|
chr25_-_10503043 Show fit | 3.56 |
ENSDART00000155404
|
cytochrome c oxidase subunit 8b |
|
chr19_+_10339538 Show fit | 3.45 |
ENSDART00000151808
ENSDART00000151235 |
recoverin 3 |
|
chr12_+_24342303 Show fit | 3.27 |
ENSDART00000111239
|
neurexin 1a |
|
chr2_+_39021282 Show fit | 3.00 |
ENSDART00000056577
|
si:ch211-119o8.7 |
|
chr20_-_40755614 Show fit | 2.61 |
ENSDART00000061247
|
connexin 32.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 7.3 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.3 | 3.6 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.1 | 3.6 | GO:0006119 | oxidative phosphorylation(GO:0006119) |
0.3 | 2.2 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.1 | 2.2 | GO:0032291 | central nervous system myelination(GO:0022010) axon ensheathment in central nervous system(GO:0032291) |
0.0 | 2.2 | GO:0007173 | epidermal growth factor receptor signaling pathway(GO:0007173) |
0.0 | 2.2 | GO:0010506 | regulation of autophagy(GO:0010506) |
0.7 | 2.1 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.5 | 2.1 | GO:0007217 | tachykinin receptor signaling pathway(GO:0007217) |
0.1 | 2.1 | GO:0050728 | negative regulation of inflammatory response(GO:0050728) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0030424 | axon(GO:0030424) |
0.6 | 3.6 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.2 | 3.6 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.1 | 2.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.1 | 2.2 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.0 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.0 | 1.9 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.3 | 1.8 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.2 | 1.7 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.2 | 1.6 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 3.6 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.0 | 2.5 | GO:0005179 | hormone activity(GO:0005179) |
0.7 | 2.2 | GO:0005006 | epidermal growth factor-activated receptor activity(GO:0005006) |
0.4 | 2.2 | GO:0004692 | cGMP-dependent protein kinase activity(GO:0004692) |
0.1 | 2.2 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
0.1 | 2.2 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.7 | 2.1 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.3 | 2.1 | GO:0032052 | bile acid binding(GO:0032052) |
0.1 | 2.1 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 1.0 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 1.0 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 0.7 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.9 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.0 | 1.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 1.1 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 1.0 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 0.6 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.0 | 0.4 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.0 | 0.2 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |