PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
msx1b | dr11_v1_chr1_+_49352900_49352900 | 0.70 | 7.8e-04 | Click! |
msx3 | dr11_v1_chr13_+_24662238_24662238 | 0.56 | 1.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_23692462 Show fit | 1.62 |
ENSDART00000145934
|
homeobox B7a |
|
chr21_+_15592426 Show fit | 1.22 |
ENSDART00000138207
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b |
|
chr9_-_32343673 Show fit | 1.17 |
ENSDART00000078499
|
raftlin family member 2 |
|
chr7_-_8374950 Show fit | 1.13 |
ENSDART00000057101
|
aerolysin-like protein |
|
chr20_-_9436521 Show fit | 1.11 |
ENSDART00000133000
|
zgc:101840 |
|
chr4_-_77260727 Show fit | 1.06 |
ENSDART00000075770
|
zgc:162948 |
|
chr20_+_11731039 Show fit | 1.02 |
ENSDART00000152215
ENSDART00000152585 |
si:ch211-155o21.3 |
|
chr14_+_9421510 Show fit | 1.02 |
ENSDART00000123652
|
high mobility group nucleosome binding domain 6 |
|
chr15_-_25518084 Show fit | 0.97 |
ENSDART00000158594
|
hypoxia-inducible factor 1, alpha subunit, like |
|
chr19_-_19871211 Show fit | 0.96 |
ENSDART00000170980
|
even-skipped homeobox 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | GO:0002430 | complement receptor mediated signaling pathway(GO:0002430) |
0.0 | 1.9 | GO:0006338 | chromatin remodeling(GO:0006338) |
0.2 | 1.7 | GO:0072498 | embryonic skeletal joint development(GO:0072498) |
0.0 | 1.3 | GO:0006413 | translational initiation(GO:0006413) |
0.1 | 1.2 | GO:2000344 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
0.0 | 1.0 | GO:0014823 | response to activity(GO:0014823) |
0.0 | 1.0 | GO:1990798 | pancreas regeneration(GO:1990798) |
0.2 | 0.9 | GO:0070986 | left/right axis specification(GO:0070986) |
0.1 | 0.9 | GO:0006369 | termination of RNA polymerase II transcription(GO:0006369) |
0.1 | 0.9 | GO:0006283 | transcription-coupled nucleotide-excision repair(GO:0006283) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.2 | 1.2 | GO:0035060 | brahma complex(GO:0035060) |
0.0 | 1.1 | GO:0046930 | pore complex(GO:0046930) |
0.0 | 1.1 | GO:0030867 | rough endoplasmic reticulum membrane(GO:0030867) |
0.0 | 1.0 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
0.1 | 0.9 | GO:0070847 | core mediator complex(GO:0070847) |
0.1 | 0.9 | GO:0070552 | BRISC complex(GO:0070552) |
0.1 | 0.8 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.1 | 0.7 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
0.0 | 0.7 | GO:0000124 | SAGA complex(GO:0000124) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | GO:0004875 | complement receptor activity(GO:0004875) |
0.0 | 2.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 1.3 | GO:0000340 | RNA 7-methylguanosine cap binding(GO:0000340) |
0.4 | 1.1 | GO:0048030 | disaccharide binding(GO:0048030) |
0.0 | 1.0 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
0.0 | 1.0 | GO:0008013 | beta-catenin binding(GO:0008013) |
0.0 | 0.9 | GO:1904315 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315) |
0.0 | 0.9 | GO:0031593 | polyubiquitin binding(GO:0031593) |
0.0 | 0.9 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 0.9 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.7 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 0.3 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.0 | 0.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.8 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 0.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 0.6 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.6 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 0.5 | REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
0.0 | 0.5 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.0 | 0.4 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |