PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
msx2a | dr11_v1_chr14_-_24081929_24081929 | 0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_7666021 Show fit | 2.94 |
ENSDART00000180007
|
|
|
chr5_-_63515210 Show fit | 1.92 |
ENSDART00000022348
|
PR domain containing 12b |
|
chr13_-_6081803 Show fit | 1.53 |
ENSDART00000099224
|
deltaD |
|
chr9_-_32753535 Show fit | 1.48 |
ENSDART00000060006
|
oligodendrocyte lineage transcription factor 2 |
|
chr16_-_55028740 Show fit | 1.37 |
ENSDART00000156368
ENSDART00000161704 |
zgc:114181 |
|
chr3_-_50954607 Show fit | 1.29 |
ENSDART00000163810
|
CDC42 effector protein (Rho GTPase binding) 4a |
|
chr1_-_45215343 Show fit | 1.20 |
ENSDART00000014727
|
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa |
|
chr25_+_14507567 Show fit | 1.19 |
ENSDART00000015681
|
developing brain homeobox 1b |
|
chr9_+_53337974 Show fit | 1.19 |
ENSDART00000145138
|
dopachrome tautomerase |
|
chr21_-_16113477 Show fit | 1.13 |
ENSDART00000147588
|
cytochrome b561 family, member A3b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.9 | GO:0051574 | positive regulation of histone H3-K9 methylation(GO:0051574) |
0.4 | 1.5 | GO:0021742 | abducens nucleus development(GO:0021742) |
0.2 | 1.5 | GO:0021523 | somatic motor neuron differentiation(GO:0021523) |
0.1 | 1.3 | GO:0031274 | pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274) |
0.4 | 1.2 | GO:0055057 | neuroblast division(GO:0055057) positive regulation of stem cell proliferation(GO:2000648) |
0.0 | 1.2 | GO:0071427 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.0 | 1.2 | GO:0021515 | cell differentiation in spinal cord(GO:0021515) |
0.3 | 1.1 | GO:0018377 | N-terminal protein myristoylation(GO:0006499) N-terminal peptidyl-glycine N-myristoylation(GO:0018008) protein myristoylation(GO:0018377) |
0.0 | 1.1 | GO:0043966 | histone H3 acetylation(GO:0043966) |
0.0 | 1.1 | GO:0042593 | carbohydrate homeostasis(GO:0033500) glucose homeostasis(GO:0042593) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0030964 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.1 | 1.2 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.1 | 1.1 | GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671) |
0.2 | 1.0 | GO:0000506 | glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506) |
0.0 | 0.9 | GO:0000795 | synaptonemal complex(GO:0000795) |
0.2 | 0.7 | GO:0034515 | proteasome storage granule(GO:0034515) |
0.1 | 0.7 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 0.7 | GO:0030904 | retromer complex(GO:0030904) |
0.2 | 0.6 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.0 | 0.6 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.1 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.6 | 1.9 | GO:1990226 | histone methyltransferase binding(GO:1990226) |
0.1 | 1.7 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
0.1 | 1.5 | GO:0005112 | Notch binding(GO:0005112) |
0.1 | 1.4 | GO:0016805 | dipeptidase activity(GO:0016805) |
0.0 | 1.4 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 1.2 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
0.0 | 1.2 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.3 | 1.1 | GO:0004379 | glycylpeptide N-tetradecanoyltransferase activity(GO:0004379) |
0.0 | 1.1 | GO:0035064 | methylated histone binding(GO:0035064) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.0 | 0.6 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.1 | 0.4 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 0.4 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.4 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.1 | 1.1 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |
0.0 | 1.1 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.1 | 1.0 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 0.7 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 0.6 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.6 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 0.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.4 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
0.0 | 0.4 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |