PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mtf1 | dr11_v1_chr16_+_4132537_4132537 | -0.35 | 1.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_10832092 Show fit | 1.01 |
ENSDART00000191851
|
translocase of outer mitochondrial membrane 40 homolog, like |
|
chr7_+_49715750 Show fit | 0.99 |
ENSDART00000019446
|
achaete-scute family bHLH transcription factor 1b |
|
chr23_-_45705525 Show fit | 0.86 |
ENSDART00000148959
|
endothelin receptor type Ab |
|
chr2_-_7666021 Show fit | 0.72 |
ENSDART00000180007
|
|
|
chr16_-_7692568 Show fit | 0.70 |
ENSDART00000148980
|
Pim proto-oncogene, serine/threonine kinase, related 209 |
|
chr4_+_38981587 Show fit | 0.68 |
ENSDART00000142713
|
si:dkey-66k12.3 |
|
chr20_+_700616 Show fit | 0.67 |
ENSDART00000168166
|
SUMO1/sentrin specific peptidase 6a |
|
chr11_-_18017287 Show fit | 0.66 |
ENSDART00000155443
|
glutamine-rich 1 |
|
chr22_-_14247276 Show fit | 0.65 |
ENSDART00000033332
|
si:ch211-246m6.5 |
|
chr1_-_35928942 Show fit | 0.63 |
ENSDART00000033566
|
SMAD family member 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0060395 | SMAD protein signal transduction(GO:0060395) |
0.1 | 1.0 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
0.0 | 1.0 | GO:0021575 | hindbrain morphogenesis(GO:0021575) |
0.2 | 0.9 | GO:0048387 | negative regulation of retinoic acid receptor signaling pathway(GO:0048387) |
0.1 | 0.9 | GO:0003319 | cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) |
0.2 | 0.7 | GO:0090230 | regulation of centromere complex assembly(GO:0090230) regulation of kinetochore assembly(GO:0090234) |
0.0 | 0.6 | GO:2000406 | positive regulation of lymphocyte migration(GO:2000403) positive regulation of T cell migration(GO:2000406) |
0.0 | 0.6 | GO:0006695 | cholesterol biosynthetic process(GO:0006695) secondary alcohol biosynthetic process(GO:1902653) |
0.2 | 0.5 | GO:0010312 | detoxification of zinc ion(GO:0010312) stress response to zinc ion(GO:1990359) |
0.1 | 0.5 | GO:0045050 | protein insertion into ER membrane by stop-transfer membrane-anchor sequence(GO:0045050) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.1 | 1.0 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.0 | 0.6 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.0 | 0.5 | GO:0072546 | ER membrane protein complex(GO:0072546) |
0.0 | 0.5 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
0.0 | 0.5 | GO:0005849 | mRNA cleavage factor complex(GO:0005849) |
0.1 | 0.4 | GO:0071065 | alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex(GO:0071065) |
0.1 | 0.3 | GO:0097361 | CIA complex(GO:0097361) |
0.0 | 0.3 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 0.2 | GO:0018444 | translation release factor complex(GO:0018444) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0070411 | I-SMAD binding(GO:0070411) |
0.1 | 1.1 | GO:0035925 | AU-rich element binding(GO:0017091) mRNA 3'-UTR AU-rich region binding(GO:0035925) |
0.1 | 1.0 | GO:0008320 | protein transmembrane transporter activity(GO:0008320) |
0.1 | 0.9 | GO:0004962 | endothelin receptor activity(GO:0004962) |
0.1 | 0.7 | GO:0070139 | ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139) |
0.0 | 0.6 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.1 | 0.5 | GO:0042974 | estrogen receptor binding(GO:0030331) retinoic acid receptor binding(GO:0042974) |
0.1 | 0.5 | GO:0003938 | IMP dehydrogenase activity(GO:0003938) |
0.1 | 0.5 | GO:0032977 | membrane insertase activity(GO:0032977) |
0.0 | 0.5 | GO:0008200 | ion channel inhibitor activity(GO:0008200) channel inhibitor activity(GO:0016248) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.5 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 0.4 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.1 | 1.1 | REACTOME DESTABILIZATION OF MRNA BY KSRP | Genes involved in Destabilization of mRNA by KSRP |
0.0 | 0.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.5 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.5 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.5 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 0.4 | REACTOME TRAF6 MEDIATED NFKB ACTIVATION | Genes involved in TRAF6 mediated NF-kB activation |
0.0 | 0.3 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.0 | 0.2 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.0 | 0.2 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |