PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
myb | dr11_v1_chr23_+_31815423_31815492 | 0.95 | 4.3e-10 | Click! |
mybl1 | dr11_v1_chr24_+_23791758_23791839 | 0.42 | 7.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_25935167 Show fit | 4.93 |
ENSDART00000139855
|
GTPase activating protein (SH3 domain) binding protein 1 |
|
chr3_+_27027781 Show fit | 3.96 |
ENSDART00000065495
|
epithelial membrane protein 2 |
|
chr10_-_35257458 Show fit | 3.87 |
ENSDART00000143890
ENSDART00000139107 ENSDART00000082445 |
proline rich 11 |
|
chr6_-_36552844 Show fit | 3.36 |
ENSDART00000023613
|
hairy-related 6 |
|
chr6_+_40832635 Show fit | 3.26 |
ENSDART00000011931
|
RuvB-like AAA ATPase 1 |
|
chr1_-_53684005 Show fit | 3.24 |
ENSDART00000108906
|
exportin 1 (CRM1 homolog, yeast) a |
|
chr3_+_23737795 Show fit | 3.05 |
ENSDART00000182247
|
homeobox B3a |
|
chr3_+_41922114 Show fit | 2.93 |
ENSDART00000138280
|
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
|
chr9_-_33121535 Show fit | 2.74 |
ENSDART00000166371
ENSDART00000138052 |
zgc:172014 |
|
chr16_-_27566552 Show fit | 2.63 |
ENSDART00000142102
|
zgc:153215 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 6.2 | GO:0000056 | ribosomal small subunit export from nucleus(GO:0000056) |
0.1 | 4.6 | GO:0036297 | interstrand cross-link repair(GO:0036297) |
1.3 | 4.0 | GO:0003071 | renal system process involved in regulation of blood volume(GO:0001977) renal system process involved in regulation of systemic arterial blood pressure(GO:0003071) regulation of glomerular filtration(GO:0003093) |
0.6 | 4.0 | GO:0030422 | production of siRNA involved in RNA interference(GO:0030422) |
0.6 | 3.9 | GO:0006283 | transcription-coupled nucleotide-excision repair(GO:0006283) |
0.1 | 3.9 | GO:0007050 | cell cycle arrest(GO:0007050) |
0.0 | 3.9 | GO:0016573 | histone acetylation(GO:0016573) |
0.7 | 3.7 | GO:2000001 | regulation of DNA damage checkpoint(GO:2000001) |
0.0 | 3.7 | GO:0048704 | embryonic skeletal system morphogenesis(GO:0048704) |
0.1 | 3.5 | GO:0007520 | myoblast fusion(GO:0007520) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.7 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 4.1 | GO:0045121 | membrane raft(GO:0045121) membrane microdomain(GO:0098857) |
0.5 | 3.4 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.8 | 3.3 | GO:0097255 | R2TP complex(GO:0097255) |
0.0 | 3.2 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 3.1 | GO:0043596 | nuclear replication fork(GO:0043596) |
0.0 | 2.7 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.3 | 2.6 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
0.0 | 2.6 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.5 | 2.5 | GO:0031415 | NatA complex(GO:0031415) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.1 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.0 | 6.1 | GO:0003924 | GTPase activity(GO:0003924) |
0.0 | 6.1 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.5 | 4.8 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.0 | 4.4 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.1 | 3.5 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
0.7 | 3.3 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.1 | 3.1 | GO:0043539 | protein serine/threonine kinase activator activity(GO:0043539) |
0.7 | 2.9 | GO:0033829 | O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity(GO:0033829) |
0.7 | 2.9 | GO:0004525 | ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.8 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 3.5 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.1 | 3.3 | PID MYC PATHWAY | C-MYC pathway |
0.1 | 2.6 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 2.6 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 2.1 | PID ATM PATHWAY | ATM pathway |
0.1 | 2.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 1.9 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 1.8 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 4.3 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.1 | 3.3 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.2 | 2.9 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.0 | 2.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 2.4 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.2 | 1.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.1 | 1.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 1.8 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |